Neo4j 永远加载
Neo4j taking forever to load
我在 linux 16G 内存的机器上使用 Neo4j 3.2.1。
我正在尝试从 11M 行的 csv 文件加载图表，最大节点数约为 150K 个节点。
加载需要很长时间，我尝试增加堆大小，使用从 10000 到 100000 的定期提交，但仍然没有任何改变，它现在挂了大约 2 个小时。
我查了一下互联网，发现它不应该花那么多时间
这是配置文件
#*****************************************************************
# Neo4j configuration
#
# For more details and a complete list of settings, please see
# https://neo4j.com/docs/operations-manual/current/reference/configuration-settings/
#*****************************************************************
# The name of the database to mount
#dbms.active_database=graph.db
# Paths of directories in the installation.
#dbms.directories.data=data
#dbms.directories.plugins=plugins
#dbms.directories.certificates=certificates
#dbms.directories.logs=logs
#dbms.directories.lib=lib
#dbms.directories.run=run
# This setting constrains all `LOAD CSV` import files to be under the `import` directory. Remove or comment it out to
# allow files to be loaded from anywhere in the filesystem; this introduces possible security problems. See the
# `LOAD CSV` section of the manual for details.
dbms.directories.import=import
# Whether requests to Neo4j are authenticated.
# To disable authentication, uncomment this line
#dbms.security.auth_enabled=false
# Enable this to be able to upgrade a store from an older version.
dbms.allow_format_migration=true
# Java Heap Size: by default the Java heap size is dynamically
# calculated based on available system resources.
# Uncomment these lines to set specific initial and maximum
# heap size.
dbms.memory.heap.initial_size=512m
dbms.memory.heap.max_size=15400m
# The amount of memory to use for mapping the store files, in bytes (or
# kilobytes with the 'k' suffix, megabytes with 'm' and gigabytes with 'g').
# If Neo4j is running on a dedicated server, then it is generally recommended
# to leave about 2-4 gigabytes for the operating system, give the JVM enough
# heap to hold all your transaction state and query context, and then leave the
# rest for the page cache.
# The default page cache memory assumes the machine is dedicated to running
# Neo4j, and is heuristically set to 50% of RAM minus the max Java heap size.
dbms.memory.pagecache.size=14g
#*****************************************************************
# Network connector configuration
#*****************************************************************
# With default configuration Neo4j only accepts local connections.
# To accept non-local connections, uncomment this line:
dbms.connectors.default_listen_address=0.0.0.0
# You can also choose a specific network interface, and configure a non-default
# port for each connector, by setting their individual listen_address.
# The address at which this server can be reached by its clients. This may be the server's IP address or DNS name, or
# it may be the address of a reverse proxy which sits in front of the server. This setting may be overridden for
# individual connectors below.
#dbms.connectors.default_advertised_address=localhost
# You can also choose a specific advertised hostname or IP address, and
# configure an advertised port for each connector, by setting their
# individual advertised_address.
# Bolt connector
dbms.connector.bolt.enabled=true
#dbms.connector.bolt.tls_level=OPTIONAL
#dbms.connector.bolt.listen_address=:7687
# HTTP Connector. There must be exactly one HTTP connector.
dbms.connector.http.enabled=true
#dbms.connector.http.listen_address=:7474
# HTTPS Connector. There can be zero or one HTTPS connectors.
dbms.connector.https.enabled=true
#dbms.connector.https.listen_address=:7473
# Number of Neo4j worker threads.
#dbms.threads.worker_count=
#*****************************************************************
# Logging configuration
#*****************************************************************
# To enable HTTP logging, uncomment this line
#dbms.logs.http.enabled=true
# Number of HTTP logs to keep.
#dbms.logs.http.rotation.keep_number=5
# Size of each HTTP log that is kept.
#dbms.logs.http.rotation.size=20m
# To enable GC Logging, uncomment this line
#dbms.logs.gc.enabled=true
# GC Logging Options
# see http://docs.oracle.com/cd/E19957-01/819-0084-10/pt_tuningjava.html#wp57013 for more information.
#dbms.logs.gc.options=-XX:+PrintGCDetails -XX:+PrintGCDateStamps -XX:+PrintGCApplicationStoppedTime -XX:+PrintPromotionFailure -XX:+PrintTenuringDistribution
# Number of GC logs to keep.
#dbms.logs.gc.rotation.keep_number=5
# Size of each GC log that is kept.
#dbms.logs.gc.rotation.size=20m
# Size threshold for rotation of the debug log. If set to zero then no rotation will occur. Accepts a binary suffix "k",
# "m" or "g".
#dbms.logs.debug.rotation.size=20m
# Maximum number of history files for the internal log.
#dbms.logs.debug.rotation.keep_number=7
#*****************************************************************
# Miscellaneous configuration
#*****************************************************************
# Enable this to specify a parser other than the default one.
#cypher.default_language_version=3.0
# Determines if Cypher will allow using file URLs when loading data using
# `LOAD CSV`. Setting this value to `false` will cause Neo4j to fail `LOAD CSV`
# clauses that load data from the file system.
#dbms.security.allow_csv_import_from_file_urls=true
# Retention policy for transaction logs needed to perform recovery and backups.
dbms.tx_log.rotation.retention_policy=1 days
# Enable a remote shell server which Neo4j Shell clients can log in to.
#dbms.shell.enabled=true
# The network interface IP the shell will listen on (use 0.0.0.0 for all interfaces).
#dbms.shell.host=127.0.0.1
# The port the shell will listen on, default is 1337.
#dbms.shell.port=1337
# Only allow read operations from this Neo4j instance. This mode still requires
# write access to the directory for lock purposes.
#dbms.read_only=false
# Comma separated list of JAX-RS packages containing JAX-RS resources, one
# package name for each mountpoint. The listed package names will be loaded
# under the mountpoints specified. Uncomment this line to mount the
# org.neo4j.examples.server.unmanaged.HelloWorldResource.java from
# neo4j-server-examples under /examples/unmanaged, resulting in a final URL of
# http://localhost:7474/examples/unmanaged/helloworld/{nodeId}
#dbms.unmanaged_extension_classes=org.neo4j.examples.server.unmanaged=/examples/unmanaged
#********************************************************************
# JVM Parameters
#********************************************************************
# G1GC generally strikes a good balance between throughput and tail
# latency, without too much tuning.
dbms.jvm.additional=-XX:+UseG1GC
# Have common exceptions keep producing stack traces, so they can be
# debugged regardless of how often logs are rotated.
dbms.jvm.additional=-XX:-OmitStackTraceInFastThrow
# Make sure that `initmemory` is not only allocated, but committed to
# the process, before starting the database. This reduces memory
# fragmentation, increasing the effectiveness of transparent huge
# pages. It also reduces the possibility of seeing performance drop
# due to heap-growing GC events, where a decrease in available page
# cache leads to an increase in mean IO response time.
# Try reducing the heap memory, if this flag degrades performance.
dbms.jvm.additional=-XX:+AlwaysPreTouch
# Trust that non-static final fields are really final.
# This allows more optimizations and improves overall performance.
# NOTE: Disable this if you use embedded mode, or have extensions or dependencies that may use reflection or
# serialization to change the value of final fields!
dbms.jvm.additional=-XX:+UnlockExperimentalVMOptions
dbms.jvm.additional=-XX:+TrustFinalNonStaticFields
# Disable explicit garbage collection, which is occasionally invoked by the JDK itself.
dbms.jvm.additional=-XX:+DisableExplicitGC
# Remote JMX monitoring, uncomment and adjust the following lines as needed. Absolute paths to jmx.access and
# jmx.password files are required.
# Also make sure to update the jmx.access and jmx.password files with appropriate permission roles and passwords,
# the shipped configuration contains only a read only role called 'monitor' with password 'Neo4j'.
# For more details, see: http://download.oracle.com/javase/8/docs/technotes/guides/management/agent.html
# On Unix based systems the jmx.password file needs to be owned by the user that will run the server,
# and have permissions set to 0600.
# For details on setting these file permissions on Windows see:
# http://docs.oracle.com/javase/8/docs/technotes/guides/management/security-windows.html
#dbms.jvm.additional=-Dcom.sun.management.jmxremote.port=3637
#dbms.jvm.additional=-Dcom.sun.management.jmxremote.authenticate=true
#dbms.jvm.additional=-Dcom.sun.management.jmxremote.ssl=false
#dbms.jvm.additional=-Dcom.sun.management.jmxremote.password.file=/absolute/path/to/conf/jmx.password
#dbms.jvm.additional=-Dcom.sun.management.jmxremote.access.file=/absolute/path/to/conf/jmx.access
# Some systems cannot discover host name automatically, and need this line configured:
#dbms.jvm.additional=-Djava.rmi.server.hostname=$THE_NEO4J_SERVER_HOSTNAME
# Expand Diffie Hellman (DH) key size from default 1024 to 2048 for DH-RSA cipher suites used in server TLS handshakes.
# This is to protect the server from any potential passive eavesdropping.
dbms.jvm.additional=-Djdk.tls.ephemeralDHKeySize=2048
#********************************************************************
# Wrapper Windows NT/2000/XP Service Properties
#********************************************************************
# WARNING - Do not modify any of these properties when an application
# using this configuration file has been installed as a service.
# Please uninstall the service before modifying this section. The
# service can then be reinstalled.
# Name of the service
dbms.windows_service_name=neo4j
#********************************************************************
# Other Neo4j system properties
#********************************************************************
dbms.jvm.additional=-Dunsupported.dbms.udc.source=tarball
长时间加载后出现此错误
Java HotSpot(TM) 64-Bit Server VM warning: INFO: os::commit_memory(0x000000072c000000, 497025024, 0) failed; error='Ne peut allouer de l a mémoire' (errno=12)
#
# There is insufficient memory for the Java Runtime Environment to continue.
# Native memory allocation (mmap) failed to map 497025024 bytes for committing reserved memory.
我该如何解决这个问题？
查询
CREATE CONSTRAINT ON (n:Node) ASSERT n.NodeID IS UNIQUE;
USING PERIODIC COMMIT 100000
LOAD CSV WITH HEADERS FROM 'file:///file.csv'
AS line
MERGE (n1:Node {NodeID: line.p1})
MERGE (n2:Node {NodeID: line.p2})
MERGE (n1)-[:ACTING_WITH_L {Score: TOFLOAT(line.score)}]->(n2);
当我 运行 解释您的查询时，我注意到其中有一个 EAGER 操作。当使用 LOAD CSV 时 EAGER 是计划的一部分时，它会回退到不使用 PERIODIC COMMIT 的处理方式，并且您 运行 会遇到内存问题。
这里有一个 blog post 关于这个，包括解决方案：确保节点作为一个单独的操作合并到图中，并且当您确定节点已加载时，单独处理关系匹配节点而不是使用合并。
而不是 MERGE ... MERGE ... MERGE 模式来合并两个节点，然后是关系，使用 MATCH ... MATCH ... MERGE。此外，如果您确定 none 的关系已经存在于图表中，您可能希望对关系使用 CREATE 而不是 MERGE 来加快速度。
我在 linux 16G 内存的机器上使用 Neo4j 3.2.1。 我正在尝试从 11M 行的 csv 文件加载图表，最大节点数约为 150K 个节点。 加载需要很长时间，我尝试增加堆大小，使用从 10000 到 100000 的定期提交，但仍然没有任何改变，它现在挂了大约 2 个小时。 我查了一下互联网，发现它不应该花那么多时间 这是配置文件
#*****************************************************************
# Neo4j configuration
#
# For more details and a complete list of settings, please see
# https://neo4j.com/docs/operations-manual/current/reference/configuration-settings/
#*****************************************************************
# The name of the database to mount
#dbms.active_database=graph.db
# Paths of directories in the installation.
#dbms.directories.data=data
#dbms.directories.plugins=plugins
#dbms.directories.certificates=certificates
#dbms.directories.logs=logs
#dbms.directories.lib=lib
#dbms.directories.run=run
# This setting constrains all `LOAD CSV` import files to be under the `import` directory. Remove or comment it out to
# allow files to be loaded from anywhere in the filesystem; this introduces possible security problems. See the
# `LOAD CSV` section of the manual for details.
dbms.directories.import=import
# Whether requests to Neo4j are authenticated.
# To disable authentication, uncomment this line
#dbms.security.auth_enabled=false
# Enable this to be able to upgrade a store from an older version.
dbms.allow_format_migration=true
# Java Heap Size: by default the Java heap size is dynamically
# calculated based on available system resources.
# Uncomment these lines to set specific initial and maximum
# heap size.
dbms.memory.heap.initial_size=512m
dbms.memory.heap.max_size=15400m
# The amount of memory to use for mapping the store files, in bytes (or
# kilobytes with the 'k' suffix, megabytes with 'm' and gigabytes with 'g').
# If Neo4j is running on a dedicated server, then it is generally recommended
# to leave about 2-4 gigabytes for the operating system, give the JVM enough
# heap to hold all your transaction state and query context, and then leave the
# rest for the page cache.
# The default page cache memory assumes the machine is dedicated to running
# Neo4j, and is heuristically set to 50% of RAM minus the max Java heap size.
dbms.memory.pagecache.size=14g
#*****************************************************************
# Network connector configuration
#*****************************************************************
# With default configuration Neo4j only accepts local connections.
# To accept non-local connections, uncomment this line:
dbms.connectors.default_listen_address=0.0.0.0
# You can also choose a specific network interface, and configure a non-default
# port for each connector, by setting their individual listen_address.
# The address at which this server can be reached by its clients. This may be the server's IP address or DNS name, or
# it may be the address of a reverse proxy which sits in front of the server. This setting may be overridden for
# individual connectors below.
#dbms.connectors.default_advertised_address=localhost
# You can also choose a specific advertised hostname or IP address, and
# configure an advertised port for each connector, by setting their
# individual advertised_address.
# Bolt connector
dbms.connector.bolt.enabled=true
#dbms.connector.bolt.tls_level=OPTIONAL
#dbms.connector.bolt.listen_address=:7687
# HTTP Connector. There must be exactly one HTTP connector.
dbms.connector.http.enabled=true
#dbms.connector.http.listen_address=:7474
# HTTPS Connector. There can be zero or one HTTPS connectors.
dbms.connector.https.enabled=true
#dbms.connector.https.listen_address=:7473
# Number of Neo4j worker threads.
#dbms.threads.worker_count=
#*****************************************************************
# Logging configuration
#*****************************************************************
# To enable HTTP logging, uncomment this line
#dbms.logs.http.enabled=true
# Number of HTTP logs to keep.
#dbms.logs.http.rotation.keep_number=5
# Size of each HTTP log that is kept.
#dbms.logs.http.rotation.size=20m
# To enable GC Logging, uncomment this line
#dbms.logs.gc.enabled=true
# GC Logging Options
# see http://docs.oracle.com/cd/E19957-01/819-0084-10/pt_tuningjava.html#wp57013 for more information.
#dbms.logs.gc.options=-XX:+PrintGCDetails -XX:+PrintGCDateStamps -XX:+PrintGCApplicationStoppedTime -XX:+PrintPromotionFailure -XX:+PrintTenuringDistribution
# Number of GC logs to keep.
#dbms.logs.gc.rotation.keep_number=5
# Size of each GC log that is kept.
#dbms.logs.gc.rotation.size=20m
# Size threshold for rotation of the debug log. If set to zero then no rotation will occur. Accepts a binary suffix "k",
# "m" or "g".
#dbms.logs.debug.rotation.size=20m
# Maximum number of history files for the internal log.
#dbms.logs.debug.rotation.keep_number=7
#*****************************************************************
# Miscellaneous configuration
#*****************************************************************
# Enable this to specify a parser other than the default one.
#cypher.default_language_version=3.0
# Determines if Cypher will allow using file URLs when loading data using
# `LOAD CSV`. Setting this value to `false` will cause Neo4j to fail `LOAD CSV`
# clauses that load data from the file system.
#dbms.security.allow_csv_import_from_file_urls=true
# Retention policy for transaction logs needed to perform recovery and backups.
dbms.tx_log.rotation.retention_policy=1 days
# Enable a remote shell server which Neo4j Shell clients can log in to.
#dbms.shell.enabled=true
# The network interface IP the shell will listen on (use 0.0.0.0 for all interfaces).
#dbms.shell.host=127.0.0.1
# The port the shell will listen on, default is 1337.
#dbms.shell.port=1337
# Only allow read operations from this Neo4j instance. This mode still requires
# write access to the directory for lock purposes.
#dbms.read_only=false
# Comma separated list of JAX-RS packages containing JAX-RS resources, one
# package name for each mountpoint. The listed package names will be loaded
# under the mountpoints specified. Uncomment this line to mount the
# org.neo4j.examples.server.unmanaged.HelloWorldResource.java from
# neo4j-server-examples under /examples/unmanaged, resulting in a final URL of
# http://localhost:7474/examples/unmanaged/helloworld/{nodeId}
#dbms.unmanaged_extension_classes=org.neo4j.examples.server.unmanaged=/examples/unmanaged
#********************************************************************
# JVM Parameters
#********************************************************************
# G1GC generally strikes a good balance between throughput and tail
# latency, without too much tuning.
dbms.jvm.additional=-XX:+UseG1GC
# Have common exceptions keep producing stack traces, so they can be
# debugged regardless of how often logs are rotated.
dbms.jvm.additional=-XX:-OmitStackTraceInFastThrow
# Make sure that `initmemory` is not only allocated, but committed to
# the process, before starting the database. This reduces memory
# fragmentation, increasing the effectiveness of transparent huge
# pages. It also reduces the possibility of seeing performance drop
# due to heap-growing GC events, where a decrease in available page
# cache leads to an increase in mean IO response time.
# Try reducing the heap memory, if this flag degrades performance.
dbms.jvm.additional=-XX:+AlwaysPreTouch
# Trust that non-static final fields are really final.
# This allows more optimizations and improves overall performance.
# NOTE: Disable this if you use embedded mode, or have extensions or dependencies that may use reflection or
# serialization to change the value of final fields!
dbms.jvm.additional=-XX:+UnlockExperimentalVMOptions
dbms.jvm.additional=-XX:+TrustFinalNonStaticFields
# Disable explicit garbage collection, which is occasionally invoked by the JDK itself.
dbms.jvm.additional=-XX:+DisableExplicitGC
# Remote JMX monitoring, uncomment and adjust the following lines as needed. Absolute paths to jmx.access and
# jmx.password files are required.
# Also make sure to update the jmx.access and jmx.password files with appropriate permission roles and passwords,
# the shipped configuration contains only a read only role called 'monitor' with password 'Neo4j'.
# For more details, see: http://download.oracle.com/javase/8/docs/technotes/guides/management/agent.html
# On Unix based systems the jmx.password file needs to be owned by the user that will run the server,
# and have permissions set to 0600.
# For details on setting these file permissions on Windows see:
# http://docs.oracle.com/javase/8/docs/technotes/guides/management/security-windows.html
#dbms.jvm.additional=-Dcom.sun.management.jmxremote.port=3637
#dbms.jvm.additional=-Dcom.sun.management.jmxremote.authenticate=true
#dbms.jvm.additional=-Dcom.sun.management.jmxremote.ssl=false
#dbms.jvm.additional=-Dcom.sun.management.jmxremote.password.file=/absolute/path/to/conf/jmx.password
#dbms.jvm.additional=-Dcom.sun.management.jmxremote.access.file=/absolute/path/to/conf/jmx.access
# Some systems cannot discover host name automatically, and need this line configured:
#dbms.jvm.additional=-Djava.rmi.server.hostname=$THE_NEO4J_SERVER_HOSTNAME
# Expand Diffie Hellman (DH) key size from default 1024 to 2048 for DH-RSA cipher suites used in server TLS handshakes.
# This is to protect the server from any potential passive eavesdropping.
dbms.jvm.additional=-Djdk.tls.ephemeralDHKeySize=2048
#********************************************************************
# Wrapper Windows NT/2000/XP Service Properties
#********************************************************************
# WARNING - Do not modify any of these properties when an application
# using this configuration file has been installed as a service.
# Please uninstall the service before modifying this section. The
# service can then be reinstalled.
# Name of the service
dbms.windows_service_name=neo4j
#********************************************************************
# Other Neo4j system properties
#********************************************************************
dbms.jvm.additional=-Dunsupported.dbms.udc.source=tarball
长时间加载后出现此错误
Java HotSpot(TM) 64-Bit Server VM warning: INFO: os::commit_memory(0x000000072c000000, 497025024, 0) failed; error='Ne peut allouer de l a mémoire' (errno=12)
#
# There is insufficient memory for the Java Runtime Environment to continue.
# Native memory allocation (mmap) failed to map 497025024 bytes for committing reserved memory.
我该如何解决这个问题？
查询
CREATE CONSTRAINT ON (n:Node) ASSERT n.NodeID IS UNIQUE;
USING PERIODIC COMMIT 100000
LOAD CSV WITH HEADERS FROM 'file:///file.csv'
AS line
MERGE (n1:Node {NodeID: line.p1})
MERGE (n2:Node {NodeID: line.p2})
MERGE (n1)-[:ACTING_WITH_L {Score: TOFLOAT(line.score)}]->(n2);
当我 运行 解释您的查询时，我注意到其中有一个 EAGER 操作。当使用 LOAD CSV 时 EAGER 是计划的一部分时，它会回退到不使用 PERIODIC COMMIT 的处理方式，并且您 运行 会遇到内存问题。
这里有一个 blog post 关于这个，包括解决方案：确保节点作为一个单独的操作合并到图中，并且当您确定节点已加载时，单独处理关系匹配节点而不是使用合并。
而不是 MERGE ... MERGE ... MERGE 模式来合并两个节点，然后是关系，使用 MATCH ... MATCH ... MERGE。此外，如果您确定 none 的关系已经存在于图表中，您可能希望对关系使用 CREATE 而不是 MERGE 来加快速度。