如何在 python dask 中使用 group by describe with unstack 操作？

Question

我正在尝试使用dask中的describe() and unstack()函数来获取数据的汇总统计信息。

但是，我收到如下所示的错误

import dask.dataframe as dd
df = dd.read_csv('Measurement_table.csv',assume_missing=True)
df.describe().compute() #this works but when I try to use `unstack`, i get an error

实际上我正在尝试使下面的 python pandas 代码在 dask

的帮助下运行得更快

df.groupby(['person_id','measurement_concept_id','visit_occurrence_id'])['value_as_number']
    .describe()
    .unstack()
    .swaplevel(0,1,axis=1)
    .reindex(df['readings'].unique(), axis=1, level=0)

我尝试将 compute() 添加到每个输出级，如下所示

df1 = df.groupby(['person_id','measurement_concept_id','visit_occurrence_id'])['value_as_number'].describe().unstack().swaplevel(0,1,axis=1).reindex(df['readings'].unique(), axis=1, level=0).compute()

我收到以下错误，但是 same works well in pandas

谁能帮我解决这个问题？

Answer 1

在 dask unstack 未实现，但 describe 可以与 apply 一起使用：

df = (sd.groupby(['subject_id','readings'])['val']
        .apply(lambda x: x.describe())
        .reset_index()
        .rename(columns={'level_2':'func'})
        .compute()
        )
print (df)
    subject_id readings   func        val
0            1   READ_1  count   2.000000
1            1   READ_1   mean   6.000000
2            1   READ_1    std   1.414214
3            1   READ_1    min   5.000000
4            1   READ_1    25%   5.500000
..         ...      ...    ...        ...
51           4  READ_09    min  45.000000
52           4  READ_09    25%  45.000000
53           4  READ_09    50%  45.000000
54           4  READ_09    75%  45.000000
55           4  READ_09    max  45.000000

[112 rows x 4 columns]

如何在 python dask 中使用 group by describe with unstack 操作？

How to use group by describe with unstack operation in python dask?

python

python-3.x

dask

dask-delayed

dask-distributed