为 perl 安装 GD 模块 - 安装程序时出错

Question

我目前正在尝试在 Ubuntu.

中安装 Circos

根据说明，我已转到 bin 文件夹并且运行 perl circos

我收到一条错误消息，告诉我有一堆模块没有安装。我尝试安装它们，除了两个以外，其他都有效。

当我进入 cpan shell:

cpan[7]> install GD.pm
Running install for module 'GD'
  LDS/GD-2.56.tar.gz
  Has already been unwrapped into directory /home/qiime/.cpan/build/GD-2.56-DqDuWT
  LDS/GD-2.56.tar.gz
  '/usr/bin/perl Build.PL --installdirs site' returned status 512, not re-running

如果我从主终端运行它：

qiime@qiime-190-virtual-box:~/Documents/circos-0.69/bin$ perl -MCPAN -e 'install GD'
Reading '/home/qiime/.cpan/Metadata'
  Database was generated on Wed, 27 Jan 2016 07:41:02 GMT
Running install for module 'GD'
Checksum for /home/qiime/.cpan/sources/authors/id/L/LD/LDS/GD-2.56.tar.gz ok

==> Couldn't mkdir '/home/qiime/.cpan/build/tmp-8161': Permission denied

==> Cannot continue: Please find the reason why I cannot make the <==
==> directory                                                     <==
==> /home/qiime/.cpan/build/tmp-8161                              <==
==> and fix the problem, then retry.                              <==

其他（总共约 15 个模块）模块安装没有问题。我不确定此时该做什么。我想这很简单，我想念...？

为了完整起见，这里是尝试运行 perl circos:

的错误

qiime@qiime-190-virtual-box:~/Documents/circos-0.69/bin$ perl circos
*** REQUIRED MODULE(S) MISSING OR OUT-OF-DATE ***

You are missing one or more Perl modules, require newer versions, or some modules failed to load. Use CPAN to install it as described in this tutorial

http://www.circos.ca/documentation/tutorials/configuration/perl_and_modules

missing GD
  error Can't locate GD.pm in @INC (@INC contains: /home/qiime/Documents/circos-0.69/bin/lib /home/qiime/Documents/circos-0.69/bin/../lib /home/qiime/Documents/circos-0.69/bin /etc/perl /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 /usr/local/lib/site_perl .) at (eval 25) line 1.
missing GD::Polyline
  error Can't locate GD/Polyline.pm in @INC (@INC contains: /home/qiime/Documents/circos-0.69/bin/lib /home/qiime/Documents/circos-0.69/bin/../lib /home/qiime/Documents/circos-0.69/bin /etc/perl /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 /usr/local/lib/site_perl .) at (eval 26) line 1.

编辑：更新 我发现我可能没有安装libgd，所以我就这样做了。我试过运行ning install GD.pm 在 cpan shell:

cpan[1]> install GD.pm
Reading '/home/qiime/.cpan/Metadata'
  Database was generated on Wed, 27 Jan 2016 07:41:02 GMT
Running install for module 'GD'
Checksum for /home/qiime/.cpan/sources/authors/id/L/LD/LDS/GD-2.56.tar.gz ok
Scanning cache /home/qiime/.cpan/build for sizes
............................................................................DONE
Configuring L/LD/LDS/GD-2.56.tar.gz with Build.PL
Configuring for libgd version 2.0.36.
Checking for stray libgd header files...none found.

Unknown option: installdirs
Usage: perl Build.PL [options]

Configure GD module.

 Options:
     -options       "JPEG,FT,PNG,GIF,XPM,ANIMGIF"   feature options, separated by commas
     -lib_gd_path   path            path to libgd
     -lib_ft_path   path            path to Freetype library
     -lib_png_path  path            path to libpng
     -lib_jpeg_path path            path to libjpeg
     -lib_xpm_path  path            path to libxpm
     -lib_zlib_path path            path to libpng
     -ignore_missing_gd             Ignore missing or old libgd installations and try to compile anyway

If no options are passed on the command line.  The program will
attempt to autoconfigure itself with the gdlib-config program (present
in GD versions 2.0.27 or later).  Otherwise it will prompt for these
values interactively.
Warning: No success on command[/usr/bin/perl Build.PL --installdirs site]
  LDS/GD-2.56.tar.gz
  /usr/bin/perl Build.PL --installdirs site -- NOT OK
Failed during this command:
 LDS/GD-2.56.tar.gz                           : writemakefile NO '/usr/bin/perl Build.PL --installdirs site' returned status 512

Answer 1

这并不是真正的修复本身，但请看一下：

Cannot install GD module on darwin 13.0.1 using cpan

Answer 2

正如 G. Cito 所说，perl 中的 GD 模块存在问题。

我使用他发布的说明以及以下内容来修复错误：

Cannot install GD module on darwin 13.0.1 using cpan
Installing Circos on OS X

具体来说，为了正确安装 perl 的 GD 模块，我需要最后一段代码：

srctemp$ curl -O http://www.cpan.org/authors/id/L/LD/LDS/GD-2.49.tar.gz (if curl fails copy and past on your browser)
srctemp$ tar -xzvf GD-2.49.tar.gz
srctemp$ cd GD-2.49
srctemp/GD-2.49$ perl Makefile.PL
srctemp/GD-2.49$ make
srctemp/GD-2.49$ sudo make install

为 perl 安装 GD 模块 - 安装程序时出错

Installing GD module for perl - Errors when installing program

perl

gd

cpan