使用多面网格对错误栏进行排序？

Question

几天来我一直在为这个问题苦苦挣扎，但找不到一段代码来提供帮助。我有一个在 ggplot2 中分面的多变量条形图，我终于解决了它，所以它看起来很棒并传达了我想要显示的数据。不幸的是，当我将误差条添加到图形中时，它们全都乱了，并且漂浮在整个条形图中。 (barplot example of the bane of my existence)

数据：（谢谢，我忘记了 dput）

 > dput(plant_ag)

    structure(list(worms = structure(c(1L, 2L, 1L, 2L, 1L, 2L, 1L, 
     2L, 1L, 2L, 1L, 2L), .Label = c("No", "Yes"), class = "factor"), 
    poll_level = structure(c(1L, 1L, 2L, 2L, 3L, 3L, 1L, 1L, 
    2L, 2L, 3L, 3L), .Label = c("Low", "Medium", "Very"), class = "factor"), 
    variable = structure(c(7L, 7L, 7L, 7L, 7L, 7L, 10L, 10L, 
    10L, 10L, 10L, 10L), .Label = c("biomass", "cu_seed", "pb_seed", 
    "zn_seed", "cu_buck", "pb_buck", "zn_buck", "cu_rye", "pb_rye", 
    "zn_rye"), class = "factor"), x.mean = c(0.9945992584, 4.645085363, 
    198.390869802, 58.43054462, 3795.1789451, 2883.8860731, 942.59827934, 
    1313.1415081, 707.165653286, 1529.33515045, 3811.442312, 
    6149.4490085), x.sd = c(3.14519901565836, 14.68904967299, 
    176.524518210961, 61.362498383762, 554.023490328341, 541.012498962109, 
    224.078432824798, 221.039876468939, 468.567696912978, 1021.25312103485, 
    2431.58456925777, 3004.85636935088), x.n = c(10, 10, 10, 
    10, 10, 10, 10, 10, 10, 10, 10, 10), se = c(0.9945992584, 
    4.645085363, 55.8219540410509, 19.4045257811089, 175.197610667382, 
    171.083173933975, 70.8598222247401, 69.8989463364104, 148.174116022446, 
    322.948593002573, 768.934556217399, 950.219016881294), 
    names = c("No EW/ Low Soil", 
    "Yes EW/ Low Soil", "No EW/ Medium Soil", "Yes EW/ Medium Soil", 
    "No EW/ Very Soil", "Yes EW/ Very Soil", "No EW/ Low Soil", 
    "Yes EW/ Low Soil", "No EW/ Medium Soil", "Yes EW/ Medium Soil", 
    "No EW/ Very Soil", "Yes EW/ Very Soil"), 
     ymin = c(0, 8.88178419700125e16, 
    142.568915760949, 39.0260188388911, 3619.98133443262, 2712.80289916603, 
    871.73845711526, 1243.24256176359, 558.991537263554, 1206.38655744743, 
    3042.5077557826, 5199.22999161871), ymax = c(1.9891985168, 
    9.290170726, 254.212823843051, 77.8350704011089, 3970.37655576738, 
    3054.96924703397, 1013.45810156474, 1383.04045443641, 855.339769308446, 
    1852.28374345257, 4580.3768682174, 7099.66802538129)), 
 .Names =   c("worms", 
"poll_level", "variable", "x.mean", "x.sd", "x.n", "se", "names", 
"ymin", "ymax"), row.names = c(NA, -12L), class = "data.frame")
>

代码：

########### 图表从这里开始

library(ggplot2)

p <- ggplot(data = plant_ag, aes(x = factor(worms), fill = factor(variable), y = x.mean,
                                 group=variable))
p <- p + geom_bar(colour="black",stat = "identity",position = position_dodge(.95))
p <- p + facet_grid(. ~ poll_level)
p <- p + geom_errorbar(aes(ymin=plant_ag$ymin, ymax=plant_ag$ymax), width=0.2,  stat="identity", 
                       position = position_dodge(1))
          +  facet_wrap(worms ~poll_level, ncol=4) 
p <- p + theme_bw () + theme(legend.position = c(0.15, 0.8)) + 
  ggtitle("Zinc in Plants by Soil Pollution Level") +ylab("Zn concentration in plants, ppm") + 
  xlab("Earthworm Community Present")
p <- p + scale_fill_manual(values=c('darkgray','lightblue'), 
                           name="Experimental\nPlant",
                           labels=c("Buckwheat", "Rye")) 
p

######### 命令结束

非常非常欢迎任何帮助（或同情）！感谢你们所做的一切，这对我们所有的 N00B 来说都是难以置信的帮助。

Answer 1

在 geom_errorbar 中更改为 aes(ymin=ymin, ymax=ymax) 解决了错误栏的排序问题。您已在初次调用 ggplot 函数时将数据框传递给 ggplot，无需再次引用它。在 geom_errorbar 中使用 aes 中的数据框名称会覆盖 ggplot 设置的沿 x 轴的顺序，以便根据它们在数据框中的顺序绘制误差条，而不是比情节中的类别排序。

此外，您的代码同时具有 facet_wrap 和 facet_grid，但您只能使用其中之一。下面是更新的情节代码，facet_wrap 被注释掉了。我还设置了 y 比例，因为您的数据对于弄乱情节的错误栏之一具有巨大的价值。

下面的代码还展示了如何使用 + 将绘图组件链接在一起。

p <- ggplot(data = plant_ag, aes(x = factor(worms), fill = factor(variable), 
                                 y = x.mean, group=variable)) + 
  geom_bar(colour="black", stat="identity", position=position_dodge(.95)) + 
  facet_grid(. ~ poll_level) + 
  geom_errorbar(aes(ymin=ymin, ymax=ymax), width=0.2, stat="identity",
                position = position_dodge(1)) +  
  scale_y_continuous(limits=c(0,8000)) +
#  facet_wrap(worms ~ poll_level, ncol=4) + 
  theme_bw() + theme(legend.position = c(0.15, 0.8)) + 
  ggtitle("Zinc in Plants by Soil Pollution Level") +
  labs(y="Zn concentration in plants, ppm",
       x="Earthworm Community Present") + 
  scale_fill_manual(values=c('darkgray','lightblue'), 
                    name="Experimental\nPlant",
                    labels=c("Buckwheat", "Rye"))

使用多面网格对错误栏进行排序？

Sorting errorbars with a faceted grid?

r

facet

ggplot2

errorbar