格式化 FASTA 文件
Formatting FASTA files
我一直在寻找一种使用来自
的Bash命令格式化FASTA文件的方法
gi|723654225|ref|XP_010314935.1| PREDICTED: F-box/kelch-repeat protein At1g55270-like [Solanum lycopersicum]
MDQTIERSSNAHRGFRVQPPLVDSVSCYCNVDSGLKTVAGARKFVPGSKLCIQSDISSHAHKSKNSRRER
SRVQPPLLPSLPDDLAIACLVRVPRVELSKLRLVCKRWYRLLAGNFFYSQRKSLGMAEEWVYVVKRDRDG
RITWHAFDPTYQLWQPLPPVPGDYGEALGFGCAVLSGCHLYLFGGKDPIKGSMRRVIFYNARTNRWHRAP
到
F-box/kelch-repeat protein At1g55270-like
MDQTIERSSNAHRGFRVQPPLVDSVSCYCNVDSGLKTVAGARKFVPGSKLCIQSDISSHAHKSKNSRRER
SRVQPPLLPSLPDDLAIACLVRVPRVELSKLRLVCKRWYRLLAGNFFYSQRKSLGMAEEWVYVVKRDRDG
RITWHAFDPTYQLWQPLPPVPGDYGEALGFGCAVLSGCHLYLFGGKDPIKGSMRRVIFYNARTNRWHRAP
在 Bash 中我该怎么做？
试试这个：
awk '/F-box/ {[=10=]=" "" "} {print}' file
使用此文件：
gi|723654225|ref|XP_010314935.1| PREDICTED: F-box/kelch-repeat protein At1g55270-like [Solanum lycopersicum]
MDQTIERSSNAHRGFRVQPPLVDSVSCYCNVDSGLKTVAGARKFVPGSKLCIQSDISSHAHKSKNSRRER
SRVQPPLLPSLPDDLAIACLVRVPRVELSKLRLVCKRWYRLLAGNFFYSQRKSLGMAEEWVYVVKRDRDG
RITWHAFDPTYQLWQPLPPVPGDYGEALGFGCAVLSGCHLYLFGGKDPIKGSMRRVIFYNARTNRWHRAP
输出：
F-box/kelch-repeat protein At1g55270-like
MDQTIERSSNAHRGFRVQPPLVDSVSCYCNVDSGLKTVAGARKFVPGSKLCIQSDISSHAHKSKNSRRER
SRVQPPLLPSLPDDLAIACLVRVPRVELSKLRLVCKRWYRLLAGNFFYSQRKSLGMAEEWVYVVKRDRDG
RITWHAFDPTYQLWQPLPPVPGDYGEALGFGCAVLSGCHLYLFGGKDPIKGSMRRVIFYNARTNRWHRAP
我一直在寻找一种使用来自
的Bash命令格式化FASTA文件的方法gi|723654225|ref|XP_010314935.1| PREDICTED: F-box/kelch-repeat protein At1g55270-like [Solanum lycopersicum]
MDQTIERSSNAHRGFRVQPPLVDSVSCYCNVDSGLKTVAGARKFVPGSKLCIQSDISSHAHKSKNSRRER
SRVQPPLLPSLPDDLAIACLVRVPRVELSKLRLVCKRWYRLLAGNFFYSQRKSLGMAEEWVYVVKRDRDG
RITWHAFDPTYQLWQPLPPVPGDYGEALGFGCAVLSGCHLYLFGGKDPIKGSMRRVIFYNARTNRWHRAP
到
F-box/kelch-repeat protein At1g55270-like
MDQTIERSSNAHRGFRVQPPLVDSVSCYCNVDSGLKTVAGARKFVPGSKLCIQSDISSHAHKSKNSRRER
SRVQPPLLPSLPDDLAIACLVRVPRVELSKLRLVCKRWYRLLAGNFFYSQRKSLGMAEEWVYVVKRDRDG
RITWHAFDPTYQLWQPLPPVPGDYGEALGFGCAVLSGCHLYLFGGKDPIKGSMRRVIFYNARTNRWHRAP
在 Bash 中我该怎么做？
试试这个：
awk '/F-box/ {[=10=]=" "" "} {print}' file
使用此文件：
gi|723654225|ref|XP_010314935.1| PREDICTED: F-box/kelch-repeat protein At1g55270-like [Solanum lycopersicum] MDQTIERSSNAHRGFRVQPPLVDSVSCYCNVDSGLKTVAGARKFVPGSKLCIQSDISSHAHKSKNSRRER SRVQPPLLPSLPDDLAIACLVRVPRVELSKLRLVCKRWYRLLAGNFFYSQRKSLGMAEEWVYVVKRDRDG RITWHAFDPTYQLWQPLPPVPGDYGEALGFGCAVLSGCHLYLFGGKDPIKGSMRRVIFYNARTNRWHRAP
输出：
F-box/kelch-repeat protein At1g55270-like MDQTIERSSNAHRGFRVQPPLVDSVSCYCNVDSGLKTVAGARKFVPGSKLCIQSDISSHAHKSKNSRRER SRVQPPLLPSLPDDLAIACLVRVPRVELSKLRLVCKRWYRLLAGNFFYSQRKSLGMAEEWVYVVKRDRDG RITWHAFDPTYQLWQPLPPVPGDYGEALGFGCAVLSGCHLYLFGGKDPIKGSMRRVIFYNARTNRWHRAP