无法使用 Protege 导入 ontology

Question

我正在尝试在我之前创建的 Protege 中加载 ontology 的早期版本。但是，我在使用 TutleOntologyParser 时遇到以下错误（我将 ontology 保存为 Turtle 文件）：

uk.ac.manchester.cs.owl.owlapi.turtle.parser.ParseException: Encountered " <PNAME_LN> ":isNotGivenCombo "" at line 38, column 1.
Was expecting:
    "." ...

在文本编辑器中打开，这是我从第 36-40 行得到的内容：

###  http://purl.org/net/ontologyName/isNotGivenCombo

:isNotGivenCombo rdf:type owl:ObjectProperty ;

                           rdfs:subPropertyOf :isNotGiven .

其他解析器抛出不同的错误。是什么导致了这个问题？我该如何解决？

这是完整的堆栈跟踪：

uk.ac.manchester.cs.owl.owlapi.turtle.parser.ParseException：在第 38 行第 1 列遇到“”：isNotGivenCombo“”。期待： “。” ...

Full Stack Trace
-----------------------------------------------------------------------------------------

uk.ac.manchester.cs.owl.owlapi.turtle.parser.TurtleParserException: uk.ac.manchester.cs.owl.owlapi.turtle.parser.ParseException: Encountered " <PNAME_LN> ":isNotGivenCombo "" at line 38, column 1.
Was expecting:
    "." ...

    at uk.ac.manchester.cs.owl.owlapi.turtle.parser.TurtleOntologyParser.parse(TurtleOntologyParser.java:129)
    at uk.ac.manchester.cs.owl.owlapi.ParsableOWLOntologyFactory.loadOWLOntology(ParsableOWLOntologyFactory.java:216)
    at uk.ac.manchester.cs.owl.owlapi.OWLOntologyManagerImpl.loadOntology(OWLOntologyManagerImpl.java:868)
    at uk.ac.manchester.cs.owl.owlapi.OWLOntologyManagerImpl.loadOntologyFromOntologyDocument(OWLOntologyManagerImpl.java:797)
    at org.protege.editor.owl.model.OWLModelManagerImpl.loadOntologyFromPhysicalURI(OWLModelManagerImpl.java:298)
    at org.protege.editor.owl.OWLEditorKit.handleLoadFrom(OWLEditorKit.java:207)
    at org.protege.editor.owl.OWLEditorKit.handleLoadRequest(OWLEditorKit.java:201)
    at org.protege.editor.core.ui.action.OpenAction.openInCurrentWorkspace(OpenAction.java:65)
    at org.protege.editor.core.ui.util.UIUtil.openRequest(UIUtil.java:227)
    at org.protege.editor.core.ui.action.OpenAction.actionPerformed(OpenAction.java:33)
    at javax.swing.AbstractButton.fireActionPerformed(Unknown Source)
    at javax.swing.AbstractButton$Handler.actionPerformed(Unknown Source)
    at javax.swing.DefaultButtonModel.fireActionPerformed(Unknown Source)
    at javax.swing.DefaultButtonModel.setPressed(Unknown Source)
    at javax.swing.AbstractButton.doClick(Unknown Source)
    at javax.swing.plaf.basic.BasicMenuItemUI.doClick(Unknown Source)
    at javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(Unknown Source)
    at java.awt.AWTEventMulticaster.mouseReleased(Unknown Source)
    at java.awt.Component.processMouseEvent(Unknown Source)
    at javax.swing.JComponent.processMouseEvent(Unknown Source)
    at java.awt.Component.processEvent(Unknown Source)
    at java.awt.Container.processEvent(Unknown Source)
    at java.awt.Component.dispatchEventImpl(Unknown Source)
    at java.awt.Container.dispatchEventImpl(Unknown Source)
    at java.awt.Component.dispatchEvent(Unknown Source)
    at java.awt.LightweightDispatcher.retargetMouseEvent(Unknown Source)
    at java.awt.LightweightDispatcher.processMouseEvent(Unknown Source)
    at java.awt.LightweightDispatcher.dispatchEvent(Unknown Source)
    at java.awt.Container.dispatchEventImpl(Unknown Source)
    at java.awt.Window.dispatchEventImpl(Unknown Source)
    at java.awt.Component.dispatchEvent(Unknown Source)
    at java.awt.EventQueue.dispatchEventImpl(Unknown Source)
    at java.awt.EventQueue.access0(Unknown Source)
    at java.awt.EventQueue.run(Unknown Source)
    at java.awt.EventQueue.run(Unknown Source)
    at java.security.AccessController.doPrivileged(Native Method)
    at java.security.ProtectionDomain.doIntersectionPrivilege(Unknown Source)
    at java.security.ProtectionDomain.doIntersectionPrivilege(Unknown Source)
    at java.awt.EventQueue.run(Unknown Source)
    at java.awt.EventQueue.run(Unknown Source)
    at java.security.AccessController.doPrivileged(Native Method)
    at java.security.ProtectionDomain.doIntersectionPrivilege(Unknown Source)
    at java.awt.EventQueue.dispatchEvent(Unknown Source)
    at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source)
    at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source)
    at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source)
    at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
    at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
    at java.awt.EventDispatchThread.run(Unknown Source)
Caused by: uk.ac.manchester.cs.owl.owlapi.turtle.parser.ParseException: Encountered " <PNAME_LN> ":isNotGivenCombo "" at line 38, column 1.
Was expecting:
    "." ...

    at uk.ac.manchester.cs.owl.owlapi.turtle.parser.TurtleParser.generateParseException(TurtleParser.java:1968)
    at uk.ac.manchester.cs.owl.owlapi.turtle.parser.TurtleParser.jj_consume_token(TurtleParser.java:1829)
    at uk.ac.manchester.cs.owl.owlapi.turtle.parser.TurtleParser.parseDocument(TurtleParser.java:107)
    at uk.ac.manchester.cs.owl.owlapi.turtle.parser.TurtleOntologyParser.parse(TurtleOntologyParser.java:121)
    ... 48 more

Answer 1

问题解决了。我的基本 uri 以 / 结尾，而使用 Protege 为域和范围生成的 URI 以 # 开头。因此，某些正在形成的 URI 具有 /#，这是不允许的。例如：

www.example.com/#somedomain

为了更正错误，我将所有 :# 替换为 : 并将基本 uri 设置为以 # 结尾，即 www.example.com#.

无法使用 Protege 导入 ontology

Unable to import ontology with Protege

owl

ontology

protege