R ggplot2：绘制单图不会出现的小平面网格时出错

Question

我有一个包含一列连续变量的数据框。我想将这些数据合并到另一列中，以便生成更清晰的图。我是这样做的：

#Add new column to data frame
mydf2["conDistanceBins"] <- NA

#Bin data from conDistance column of df into 5 bins in new column
mydf2$conDistanceBins <- as.numeric(cut2(mydf2$conDistance, g=5))

完成此操作后，我开始尝试绘制。现在，当我使用带有以下代码的 ggplot2 生成单个图时，我的图会正确显示并按我希望的那样按垃圾箱着色：

p9 <- ggplot(mydf2, aes(x = x, y = y))
p9 + geom_point(aes(color=factor(mydf2$conDistanceBins)))

x 和 y 也是 mydf2 数据框中的列。

当我尝试生成像这样的小平面网格时出现了我的问题：

p7 <- ggplot(mydf2, aes(x, y)) + geom_point(aes(color=factor(mydf2$conDistanceBins)))
p7 + facet_grid(Chromosome~., margins = TRUE)

染色体是我数据框中的另一列。但是，当我尝试运行此代码时，出现以下错误：

Error: Aesthetics must be either length 1 or the same as the data (12390): colour, x, y

我不明白的是，为什么在一个实例中我的代码可以工作，而在另一个实例中却不行，实际上是代码的第二位不仅占用了第一位，还创建了一个由我的数据框的染色体列？

编辑：这是我的数据框的一部分。

           x          y          z       Gene Chromosome Pos.start boot_avg boot_low
1 -0.2201704  2.2914659 -1.0503592 AGAP000002          X       582       46        5
2 -1.6164962 -0.4252216  4.1920188 AGAP000007          X     83817       25        0
3  0.1585863 -2.1869117  0.5772591 AGAP000010          X    120773       79        2
4 -1.5126431 -0.2293787  2.9891040 AGAP000011          X    127704       54       10
5 -1.5382538 -0.1100106 -0.1838767 AGAP000012          X    146181       84       64
  boot_avglow branch_avg branch_low branch_avglow conDistance invDistance
1           9 0.01891250   0.001469      0.001865    4.472136    3.464102
2           0 0.01518050   0.000000      0.000000    6.403124    7.416198
3          39 0.02026960   0.001955      0.003372    3.741657    5.099020
4          10 0.01040867   0.003530      0.003735    6.244998    7.280110
5          67 0.01626420   0.000257      0.001936    4.123106    3.000000
  Acceptable Bootstrap Cluster conDistanceBins invDistanceBins
1      Below threshold       1               3               1
2      Below threshold       2               5               5
3      Above threshold       3               2               2
4      Above threshold       2               5               5
5      Above threshold       4               2               1

Answer 1

您的问题似乎来自 mydf2$conDistanceBins。如果你只是将 mydf2$ConDistanceBins 更改为 conDistanceBins 我就不会再收到错误了。请参阅下面的代码和输出：

p7 <- ggplot(mydf2, aes(x, y)) + geom_point(aes(color=factor(conDistanceBins)))
p7 + facet_grid(Chromosome~., margins = TRUE)

数据： 我只使用了你的相关数据：

mydf2<- structure(list(x = c(-0.2201704, -1.6164962, 0.1585863, -1.5126431, 
    -1.5382538), y = c(2.2914659, -0.4252216, -2.1869117, -0.2293787, 
    -0.1100106), z = c(-1.0503592, 4.1920188, 0.5772591, 2.989104, 
    -0.1838767), Gene = structure(1:5, .Label = c("AGAP000002", "AGAP000007", 
    "AGAP000010", "AGAP000011", "AGAP000012"), class = "factor"), 
        Chromosome = structure(c(1L, 1L, 1L, 1L, 1L), .Label = "X", class = "factor"), 
        Pos.start = c(582L, 83817L, 120773L, 127704L, 146181L), boot_avg = c(46L, 
        25L, 79L, 54L, 84L), boot_low = c(5L, 0L, 2L, 10L, 64L), 
        boot_avglow = c(9L, 0L, 39L, 10L, 67L), branch_avg = c(0.0189125, 
        0.0151805, 0.0202696, 0.01040867, 0.0162642), branch_low = c(0.001469, 
        0, 0.001955, 0.00353, 0.000257), branch_avglow = c(0.001865, 
        0, 0.003372, 0.003735, 0.001936), conDistance = c(4.472136, 
        6.403124, 3.741657, 6.244998, 4.123106), invDistance = c(3.464102, 
        7.416198, 5.09902, 7.28011, 3), conDistanceBins = c(3, 5, 
        1, 4, 2)), row.names = c("1", "2", "3", "4", "5"), .Names = c("x", 
    "y", "z", "Gene", "Chromosome", "Pos.start", "boot_avg", "boot_low", 
    "boot_avglow", "branch_avg", "branch_low", "branch_avglow", "conDistance", 
    "invDistance", "conDistanceBins"), class = "data.frame")

R ggplot2：绘制单图不会出现的小平面网格时出错

R ggplot2: Error when plotting facet grid that doesn't occur for single plot

r

ggplot2

facet