devtools 安装 github 忽略某些 .rda 文件

Question

我目前正在测试我的 R 包，它在 data/ 文件夹中有两个 .rda 文件，可以使用 devtools here. They were created using the devtools::use_data command. They are not very large files, the largest one being 713 KB. I'm trying to install my package from GitHub 找到它们:

devtools::install.github('sahirbhatnagar/manhattanly')

但由于某些原因，只有两个 .rda 文件中的一个被安装（hapmap.rda 文件没有被安装）：

 
devtools::install_github('sahirbhatnagar/manhattanly', force = TRUE, build_vignette = TRUE)
Downloading GitHub repo sahirbhatnagar/manhattanly@master
from URL https://api.github.com/repos/sahirbhatnagar/manhattanly/zipball/master
Installing manhattanly
'/usr/lib64/R/bin/R' --no-site-file --no-environ --no-save --no-restore CMD build  \
  '/tmp/RtmpEYJ9AG/devtools84183fc48b7d/sahirbhatnagar-manhattanly-0dead52' --no-resave-data --no-manual 

* checking for file ‘/tmp/RtmpEYJ9AG/devtools84183fc48b7d/sahirbhatnagar-manhattanly-0dead52/DESCRIPTION’ ... OK
* preparing ‘manhattanly’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... OK
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* looking to see if a ‘data/datalist’ file should be added
* building ‘manhattanly_0.1.0.tar.gz’

'/usr/lib64/R/bin/R' --no-site-file --no-environ --no-save --no-restore CMD INSTALL '/tmp/RtmpEYJ9AG/manhattanly_0.1.0.tar.gz'  \
  --library='/mnt/GREENWOOD_BACKUP/home/sahir.bhatnagar/Rlibs/R3.2.2' --install-tests 

* installing *source* package ‘manhattanly’ ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
Note: the specification for S3 class “AsIs” in package ‘DBI’ seems equivalent to one from package ‘jsonlite’: not turning on duplicate class definitions for this class.
** help
*** installing help indices
  converting help for package ‘manhattanly’
    finding HTML links ... done
    manhattanly                             html  

    finding level-2 HTML links ... done

    manhattanr                              html  
    qqly                                    html  
    qqr                                     html  
    significantSNP                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
Note: the specification for S3 class “AsIs” in package ‘DBI’ seems equivalent to one from package ‘jsonlite’: not turning on duplicate class definitions for this class.
* DONE (manhattanly)

当我尝试使用 devtools::check() 检查包时，我在尝试构建小插图时也遇到错误，提示未找到 hapmap 对象。

知道为什么会这样吗？ .csv file 也没有那么大~2.2 Mb

Answer 1

您的 .Rbuildignore 文件有一行：

hapmap.R

因为这些被视为正则表达式，所以您告诉 R 忽略 hapmap.rds 文件，该正则表达式模式也匹配。只需使用 $ 更新它或在目录名称前加上前缀以限制正则表达式。

devtools 安装 github 忽略某些 .rda 文件

devtools install github ignoring certain .rda files

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