R，biocLite，安装 DESeq2 时出错

Question

几天来我一直在尝试安装 DESeq2 来做一些分析。 R 和 biocLite 是最新的，当我尝试运行

时，我运行遇到了权限错误

biocLite("DESeq2")

我收到的大部分是好的消息，但最后我得到：

1: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
  installation of package ‘XML’ had non-zero exit status
2: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
  installation of package ‘annotate’ had non-zero exit status
3: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
  installation of package ‘genefilter’ had non-zero exit status
4: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
  installation of package ‘geneplotter’ had non-zero exit status
5: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
  installation of package ‘DESeq2’ had non-zero exit status
>

我试过编辑权限，运行通过 sudo 启用 R，并将我的用户添加到员工组。

我很茫然，我还能做些什么来安装这个？

谢谢

Answer 1

从日志来看，问题似乎源自 XML 包。如果 libxml2 库不可用，XML 包将无法编译。要在 Linux 上安装它：

sudo apt-get install libxml2 
sudo apt-get install libxml2-dev

然后重新运行安装。

R，biocLite，安装 DESeq2 时出错

R, biocLite, error installing DESeq2

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bioinformatics

bioconductor