如何根据文件名和计数文件将文件移动到目录中

Question

我看到了与我的问题有些相似的其他主题，但是我仍然是初学者，无法真正理解 posted 中的一些代码。

我有一个目录列表，这些目录遵循其中一种格式，但是末尾的数字不一样，缩写 (UVM) 可以来自缩写列表。

jhu-usc.edu_UVM.HumanMethylation450.Level_1.1.0.0/ jhu-usc.edu_UVM.HumanMethylation450.aux.1.0.0/ jhu-usc.edu_UVM.HumanMethylation450.mage-tab.1.0.0/

我希望制作一个脚本，根据缩写 (ex.UVM) 将目录及其文件从当前目录递归移动到新目录（如果目录不存在，则创建该目录） .

然后我希望能够计算目录中以 *idat 结尾的文件的数量，并输出一个 .txt 文件，上面写着“ For abbreviation there are 这么多个idat文件。

我最近没有太多时间来解决这个问题，我的最后期限很快就要到了。如果有人能帮我解决这个问题，我将不胜感激。

如果问题措辞或格式不正确，请原谅我，这是我的第一个post，所以我尽力了。

谢谢！

Answer 1

是这样的吗？

#!/bin/sh

#Definition of where you want the directory to be moved
destination_root="/tmp/stuff"

 function abbreviation() {

    #Default
    destination="${destination_root}/UNKNOWN"

    if [[  == UVM* ]]; then
            destination="${destination_root}/UVMFOLDER"
    fi

    if [[  == BRCA* ]]; then
            destination="${destination_root}/BRCAFOLDER"
    fi

    #Ensure folder is present
    mkdir -p ${destination} 
}


#Loop through all folders matching the prefix
for instance in jhu-usc.edu_*
do
    #Count instances of *idat files and put the result in a.txt file
    echo "${instance} - `find ${instance} -type f -name "*idat" | wc -l`" | tee -a a.txt

    abbreviation `echo "${instance}" | sed s/jhu-usc.edu_//g`

    #Move the folder to the destination
    mv ${instance} ${destination}
done

这将创建 a.txt，内容如下：

jhu-usc.edu_UVM.HumanMethylation450.Level_1.1.0.0 - 3
jhu-usc.edu_UVM.HumanMethylation450.aux.1.0.0 - 2

其中 3 和 2 是文件夹中以 idat 结尾的文件的实例数。

编辑

更改了移动文件的输出文件夹 - 我删除了前缀 jhu-usc.edu_。因此，例如 jhu-usc.edu_UVM.HumanMethylation450.Level_1.1.0.0 将移动到 /tmp/stuff/UVM.HumanMethylation450.Level_1.1.0.0

Answer 2

#!/bin/bash
#Definition of where you want the directory to be moved
destination_root="/data/nrnb01_nobackup/agross/TCGA_methylation"

#Delete tar.gz files
find . -type f -name '*tar.gz' -exec rm {} +

#Move all files within cancersubtype folders into current directory to allow ease of moving to specific directories
find . -mindepth 2 -type f -print -exec mv {} . \;

function abbreviation() {
    #Default
    destination="${destination_root}/UNKNOWN"

    if [[  == UVM* ]]; then
            destination="${destination_root}/UVMFOLDER"
    fi

    if [[  == BRCA* ]]; then
            destination="${destination_root}/BRCAFOLDER"
    fi

    if [[  == ACC* ]]; then
            destination="${destination_root}/ACCFOLDER"
    fi

    if [[  == BLCA* ]]; then
            destination="${destination_root}/BLCAFOLDER"
    fi

    if [[  == CESC* ]]; then
            destination="${destination_root}/CESCFOLDER"
    fi

    if [[  == CHOL* ]]; then
            destination="${destination_root}/CHOLFOLDER"
    fi

    if [[  == COAD* ]]; then
            destination="${destination_root}/COADFOLDER"
    fi

    if [[  == DLBC* ]]; then
            destination="${destination_root}/DLBCFOLDER"
    fi

    if [[  == ESCA* ]]; then
            destination="${destination_root}/ESCAFOLDER"
    fi

    if [[  == GBM* ]]; then
            destination="${destination_root}/GBMFOLDER"
    fi

    if [[  == HNSC* ]]; then
            destination="${destination_root}/HNSCFOLDER"
    fi

    if [[  == KICH* ]]; then
            destination="${destination_root}/KICHFOLDER"
    fi

    if [[  == KIRC* ]]; then
            destination="${destination_root}/KIRCFOLDER"
    fi

    if [[  == KIRP* ]]; then
            destination="${destination_root}/KIRPFOLDER"
    fi

    if [[  == LAML* ]]; then
            destination="${destination_root}/LAMLFOLDER"
    fi

    if [[  == LGG* ]]; then
            destination="${destination_root}/LGGFOLDER"
    fi

    if [[  == LIHC* ]]; then
            destination="${destination_root}/LIHCFOLDER"
    fi

    if [[  == LUAD* ]]; then
            destination="${destination_root}/LUADFOLDER"
    fi

    if [[  == LUSC* ]]; then
            destination="${destination_root}/LUSCFOLDER"
    fi

    if [[  == MESO* ]]; then
            destination="${destination_root}/MESOFOLDER"
    fi

    if [[  == OV* ]]; then
            destination="${destination_root}/OVFOLDER"
    fi

    if [[  == PAAD* ]]; then
            destination="${destination_root}/PAADFOLDER"
    fi

    if [[  == PCPG* ]]; then
            destination="${destination_root}/PCPGFOLDER"
    fi

    if [[  == PRAD* ]]; then
            destination="${destination_root}/PRADFOLDER"
    fi

    if [[  == READ* ]]; then
            destination="${destination_root}/READFOLDER"
    fi

    if [[  == SARC* ]]; then
            destination="${destination_root}/SARCFOLDER"
    fi

    if [[  == SKCM* ]]; then
            destination="${destination_root}/SKCMFOLDER"
    fi

    if [[  == STAD* ]]; then
            destination="${destination_root}/STADFOLDER"
    fi

    if [[  == TGCT* ]]; then
            destination="${destination_root}/TGCTFOLDER"
    fi

    if [[  == THCA* ]]; then
            destination="${destination_root}/THCAFOLDER"
    fi

    if [[  == THYM* ]]; then
            destination="${destination_root}/THYMFOLDER"
    fi

    if [[  == UCEC* ]]; then
            destination="${destination_root}/UCECFOLDER"
    fi

    if [[  == UCS* ]]; then
            destination="${destination_root}/UCSFOLDER"
    fi


    #Ensure folder is present
    mkdir -p ${destination} 
}

#Loop through all folders matching the jhu prefix
for instance in jhu-usc.edu_*
do
    #Count instances of *idat files and put the result in idat_count.txt file
    echo "${instance} - `find ${instance} -type f -name "*idat" | wc -l`" | tee -a idat_count.txt

    abbreviation `echo "${instance}" | sed s/jhu-usc.edu_//g`

    #Move the folder to the destination
    mv ${instance} ${destination}
done

如何根据文件名和计数文件将文件移动到目录中

How To Move Files Into Directories based on filename and Count Files

bash

command-line

ipython-notebook