R – No Magic [IP][y]: iPython -- 损坏的 python 内核?
R – No Magic [IP][y]: iPython -- Corrupt python kernel?
如前所述previously,当运行一个单元格
%%R
我收到以下错误:
ERROR:root:Cell magic `%%R` not found.
正在尝试
%load_ext rmagic
导致:
C:\Anaconda2\envs\ipykernel_py2\lib\site-packages\IPython\extensions\rmagic.py:11:
UserWarning: The rmagic extension in IPython has moved to `rpy2.ipython`,
please see `rpy2` documentation.
warnings.warn("The rmagic extension in IPython has moved to "
显然,该命令似乎是 "deprecated"。然后我尝试:
%load_ext rpy2.ipython
这会导致多个错误,因此我检查文件夹 C:\Anaconda2\envs\ipykernel_py2\lib\site-packages\IPython\extensions
并找到 rmagic
.py
和 .pyc
,但没有与 rpy2.ipython
相关的文件:
然后我再次尝试 %load_ext rmagic
:
The rmagic extension is already loaded. To reload it, use:
%reload_ext rmagic.py
%%R
的错误没有改变。
最后,我
pip install rpy2
当安装程序运行 Rterm.exe
that
时我收到一个错误
libgcc_s_dw2-1.dll (mentioned twice)
libbz2-1.dll
liblzma-5.dll
在这台计算机上丢失了,我必须重新安装 RTerm
,我猜它是 RTools
的一部分。最终 stderr/stdout:
Collecting rpy2
Using cached rpy2-2.8.4.tar.gz
Complete output from command python setup.py egg_info:
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "c:\users\user\appdata\local\temp\pip-build-1mtkwa\rpy2\setup.py",
line 331, in <module>
ri_ext = getRinterface_ext()
File "c:\users\user\appdata\local\temp\pip-build-1mtkwa\rpy2\setup.py", line 234,
in getRinterface_ext
if rexec.version[0] == 'development' or \
File "c:\users\user\appdata\local\temp\pip-build-1mtkwa\rpy2\setup.py",
line 160, in version
universal_newlines = True)
File "C:\Anaconda2\envs\ipykernel_py2\lib\subprocess.py",
line 574, in check_output
raise CalledProcessError(retcode, cmd, output=output)
subprocess.CalledProcessError:
Command '('C:\Anaconda2\R\bin\R', '--version')'
returned non-zero exit status -1073741515
R、RStudio 和 R-Essentials(通过 conda
) 安装在我的电脑上。在 conda
安装期间,只有关于 p11-kit
(PKCS 11) 的投诉,我认为这与此无关。
运行 >jupyter troubleshoot 显示 r-base
的版本号为 0
(向下滚动)。
[31mDEPRECATION: The default format will switch to columns in the future. You can use --format=(legacy|columns) (or define a format=(legacy|columns) in your pip.conf under the [list] section) to disable this warning.[0m
$PATH:
C
\Anaconda2\Library\bin;C
\Anaconda2\Scripts;C
\Anaconda2\Library\bin;C
\Windows\system32;C
\Windows;C
\Windows\System32\Wbem;C
\Windows\System32\WindowsPowerShell\v1.0\;%JAVA%;%PYTHONPATH%;%PYTHONPATH%\Scripts;%PYTHONPATH%\Library\bin;%GITPATH%;C
\Program Files\MATLAB\R2016b\runtime\win64;C
\Program Files\MATLAB\R2016b\bin;C
\Users\user\AppData\Local\Microsoft\WindowsApps;C
\ProgramData\Oracle\Java\javapath;C
\Program Files\Git;%GITPATH\cmd%;C
\Program Files\Git\bin;C
\Anaconda2;C
\Anaconda2\Scripts;C
\Anaconda2\Library\bin;C
\ProgramData\che;C
\Program Files\R\R-3.3.2\bin;
如您所见,PYTHONPATH 已定义。这违背了 Continuum 的建议,但我认为这不是罪魁祸首。
sys.path:
C:\Anaconda2\Scripts
C:\Anaconda2
C:\Anaconda2\python27.zip
C:\Anaconda2\DLLs
C:\Anaconda2\lib
C:\Anaconda2\lib\plat-win
C:\Anaconda2\lib\lib-tk
C:\Anaconda2\lib\site-packages
C:\Anaconda2\lib\site-packages\Sphinx-1.4.6-py2.7.egg
C:\Anaconda2\lib\site-packages\win32
C:\Anaconda2\lib\site-packages\win32\lib
C:\Anaconda2\lib\site-packages\Pythonwin
C:\Anaconda2\lib\site-packages\setuptools-27.2.0-py2.7.egg
sys.executable:
C:\Anaconda2\python.exe
sys.version:
2.7.12 |Anaconda 4.2.0 (32-bit)| (default, Jun 29 2016, 11:42:13) [MSC v.1500 32 bit (Intel)]
platform.platform():
Windows-10-10.0.14393
where jupyter:
C:\Anaconda2\Scripts\jupyter.exe
pip list:
alabaster (0.7.9)
anaconda-clean (1.0)
anaconda-client (1.5.1)
anaconda-navigator (1.3.1)
argcomplete (1.0.0)
astroid (1.4.7)
astropy (1.2.1)
Babel (2.3.4)
backports-abc (0.4)
backports.shutil-get-terminal-size (1.0.0)
backports.ssl-match-hostname (3.4.0.2)
beautifulsoup4 (4.5.1)
bitarray (0.8.1)
blaze (0.10.1)
bokeh (0.12.2)
boto (2.42.0)
Bottleneck (1.1.0)
cdecimal (2.3)
cffi (1.7.0)
chest (0.2.3)
click (6.6)
cloudpickle (0.2.1)
clyent (1.2.2)
colorama (0.3.7)
comtypes (1.1.2)
conda (4.2.13)
conda-build (2.0.2)
configobj (5.0.6)
configparser (3.5.0)
contextlib2 (0.5.3)
cryptography (1.5)
cycler (0.10.0)
Cython (0.24.1)
cytoolz (0.8.0)
dask (0.11.0)
datashape (0.5.2)
decorator (4.0.10)
dill (0.2.5)
docutils (0.12)
enum34 (1.1.6)
et-xmlfile (1.0.1)
ez-setup (0.9)
fastcache (1.0.2)
filelock (2.0.6)
Flask (0.11.1)
Flask-Cors (2.1.2)
funcsigs (1.0.2)
functools32 (3.2.3.post2)
futures (3.0.5)
gevent (1.1.2)
greenlet (0.4.10)
grin (1.2.1)
h5py (2.6.0)
HeapDict (1.0.0)
idna (2.1)
imagesize (0.7.1)
ipaddress (1.0.16)
ipykernel (4.5.0)
ipython (5.1.0)
ipython-genutils (0.1.0)
ipywidgets (5.2.2)
itsdangerous (0.24)
jdcal (1.2)
jedi (0.9.0)
Jinja2 (2.8)
jsonschema (2.5.1)
jupyter (1.0.0)
jupyter-client (4.4.0)
jupyter-console (5.0.0)
jupyter-core (4.2.0)
lazy-object-proxy (1.2.1)
llvmlite (0.13.0)
locket (0.2.0)
lxml (3.6.4)
MarkupSafe (0.23)
matplotlib (1.5.3)
menuinst (1.4.1)
mistune (0.7.3)
mpmath (0.19)
multipledispatch (0.4.8)
nb-anacondacloud (1.2.0)
nb-conda (2.0.0)
nb-conda-kernels (2.0.0)
nbconvert (4.2.0)
nbformat (4.1.0)
nbpresent (3.0.2)
networkx (1.11)
nltk (3.2.1)
nose (1.3.7)
notebook (4.2.3)
numba (0.28.1+0.gfe99fbc.dirty)
numexpr (2.6.1)
numpy (1.11.1)
odo (0.5.0)
openpyxl (2.3.2)
pandas (0.18.1)
partd (0.3.6)
path.py (0.0.0)
pathlib2 (2.1.0)
patsy (0.4.1)
pep8 (1.7.0)
pickleshare (0.7.4)
Pillow (3.3.1)
pip (9.0.1)
pkginfo (1.3.2)
ply (3.9)
prompt-toolkit (1.0.9)
psutil (4.3.1)
py (1.4.31)
pyasn1 (0.1.9)
pycosat (0.6.1)
pycparser (2.14)
pycrypto (2.6.1)
pycurl (7.43.0)
pyflakes (1.3.0)
Pygments (2.1.3)
pylint (1.5.4)
pyOpenSSL (16.0.0)
pyparsing (2.1.4)
pytest (2.9.2)
python-dateutil (2.5.3)
pytz (2016.6.1)
pywin32 (220)
PyYAML (3.12)
pyzmq (15.4.0)
QtAwesome (0.3.3)
qtconsole (4.2.1)
QtPy (1.1.2)
requests (2.11.1)
rope (0.9.4)
ruamel-yaml (-VERSION)
scikit-image (0.12.3)
scikit-learn (0.17.1)
scipy (0.18.1)
setuptools (27.2.0)
simplegeneric (0.8.1)
singledispatch (3.4.0.3)
six (1.10.0)
snowballstemmer (1.2.1)
sockjs-tornado (1.0.3)
sphinx (1.4.6)
spyder (3.0.0)
SQLAlchemy (1.0.13)
statsmodels (0.6.1)
sympy (1.0)
tables (3.2.2)
toolz (0.8.0)
tornado (4.4.1)
traitlets (4.3.0)
unicodecsv (0.14.1)
wcwidth (0.1.7)
Werkzeug (0.11.11)
wheel (0.29.0)
widgetsnbextension (1.2.6)
win-unicode-console (0.5)
wrapt (1.10.6)
xlrd (1.0.0)
XlsxWriter (0.9.3)
xlwings (0.10.0)
xlwt (1.1.2)
摘录:>>conda 列表:
# packages in environment at C:\Anaconda2:
#
r 3.3.1 r3.3.1_0 r
r-assertthat 0.1 r3.3.1_2 r
r-base 3.3.1 0 r
r-base64enc 0.1_3 r3.3.1_0 r
r-bh 1.60.0_2 r3.3.1_0 r
r-bitops 1.0_6 r3.3.1_2 r
r-boot 1.3_18 r3.3.1_0 r
r-car 2.1_2 r3.3.1_0 r
r-caret 6.0_70 r3.3.1_0 r
r-catools 1.17.1 r3.3.1_2 r
r-chron 2.3_47 r3.3.1_0 r
r-class 7.3_14 r3.3.1_0 r
r-cluster 2.0.4 r3.3.1_0 r
r-codetools 0.2_14 r3.3.1_0 r
r-colorspace 1.2_6 r3.3.1_0 r
r-crayon 1.3.1 r3.3.1_0 r
r-curl 0.9.7 r3.3.1_0 r
r-data.table 1.9.6 r3.3.1_0 r
r-dbi 0.4_1 r3.3.1_0 r
r-dichromat 2.0_0 r3.3.1_2 r
r-digest 0.6.9 r3.3.1_0 r
r-dplyr 0.4.3 r3.3.1_0 r
r-essentials 1.4.2 r3.3.1_0 r
r-evaluate 0.9 r3.3.1_0 r
r-foreach 1.4.3 r3.3.1_0 r
r-foreign 0.8_66 r3.3.1_0 r
r-formatr 1.4 r3.3.1_0 r
r-ggplot2 2.1.0 r3.3.1_0 r
r-gistr 0.3.6 r3.3.1_0 r
r-glmnet 2.0_5 r3.3.1_0 r
r-gtable 0.2.0 r3.3.1_0 r
r-hexbin 1.27.1 r3.3.1_0 r
r-highr 0.6 r3.3.1_0 r
r-htmltools 0.3.5 r3.3.1_0 r
r-htmlwidgets 0.6 r3.3.1_0 r
r-httpuv 1.3.3 r3.3.1_0 r
r-httr 1.2.0 r3.3.1_0 r
r-irdisplay 0.4.3 r3.3.1_2 r
r-irkernel 0.7 r3.3.1_2 r
r-iterators 1.0.8 r3.3.1_0 r
r-jsonlite 0.9.22 r3.3.1_0 r
r-kernsmooth 2.23_15 r3.3.1_0 r
r-knitr 1.13 r3.3.1_0 r
r-labeling 0.3 r3.3.1_2 r
r-lattice 0.20_33 r3.3.1_0 r
r-lazyeval 0.2.0 r3.3.1_0 r
r-lme4 1.1_12 r3.3.1_0 r
r-magrittr 1.5 r3.3.1_2 r
r-maps 3.1.0 r3.3.1_0 r
r-markdown 0.7.7 r3.3.1_2 r
r-mass 7.3_45 r3.3.1_0 r
r-matrix 1.2_6 r3.3.1_0 r
r-matrixmodels 0.4_1 r3.3.1_0 r
r-memoise 1.0.0 r3.3.1_0 r
r-mgcv 1.8_12 r3.3.1_0 r
r-mime 0.4 r3.3.1_0 r
r-minqa 1.2.4 r3.3.1_2 r
r-munsell 0.4.3 r3.3.1_0 r
r-nlme 3.1_128 r3.3.1_0 r
r-nloptr 1.0.4 r3.3.1_2 r
r-nnet 7.3_12 r3.3.1_0 r
r-openssl 0.9.4 r3.3.1_0 r
r-pbdzmq 0.2_3 r3.3.1_0 r
r-pbkrtest 0.4_6 r3.3.1_0 r
r-plyr 1.8.4 r3.3.1_0 r
r-pryr 0.1.2 r3.3.1_0 r
r-quantmod 0.4_5 r3.3.1_2 r
r-quantreg 5.26 r3.3.1_0 r
r-r6 2.1.2 r3.3.1_0 r
r-randomforest 4.6_12 r3.3.1_0 r
r-rbokeh 0.4.2 r3.3.1_0 r
r-rcolorbrewer 1.1_2 r3.3.1_2 r
r-rcpp 0.12.5 r3.3.1_0 r
r-rcppeigen 0.3.2.8.1 r3.3.1_0 r
r-recommended 3.3.1 r3.3.1_0 r
r-repr 0.7 r3.3.1_0 r
r-reshape2 1.4.1 r3.3.1_2 r
r-rmarkdown 0.9.6 r3.3.1_0 r
r-rpart 4.1_10 r3.3.1_0 r
r-scales 0.4.0 r3.3.1_0 r
r-shiny 0.13.2 r3.3.1_0 r
r-sparsem 1.7 r3.3.1_0 r
r-spatial 7.3_11 r3.3.1_0 r
r-stringi 1.1.1 r3.3.1_0 r
r-stringr 1.0.0 r3.3.1_0 r
r-survival 2.39_4 r3.3.1_0 r
r-tibble 1.0 r3.3.1_0 r
r-tidyr 0.5.1 r3.3.1_0 r
r-ttr 0.23_1 r3.3.1_0 r
r-uuid 0.1_2 r3.3.1_0 r
r-xtable 1.8_2 r3.3.1_0 r
r-xts 0.9_7 r3.3.1_2 r
r-yaml 2.1.13 r3.3.1_2 r
r-zoo 1.7_13 r3.3.1_0 r
我也安装了 Sage。但是,它是从虚拟框运行的,目前不是 运行。
我不确定,但我认为 GNU GCC、mingw、and/or RTools 打破了与 R
的绑定,因为 Continuum 当前 dist 中的一些错误。同时,我不知道 R-essentials 是否与 %
.
的使用完全相关
魔法在哪里?
显然 rpy2 正在接管 IPython R 魔法扩展的角色。可能有问题的是您试图通过 pip 安装 rpy2,而不是在 IPython 环境中使用 miniconda。我从网络的不同部分听说 [下面的参考资料] 您需要在您的 conda 环境中安装 rpy2 才能使链接正常工作。它也可能会解决您的 .dll 查找问题。
我的建议(Windows):
activate ipykernel_py2
conda install -c r rpy2
如果效果不错,试试:
jupyter notebook
重要的是在 运行 jupyter 时处于 ipykernel_py2 环境中。
参考:
如果您已经完成 pip install rpy2
那么您需要在使用前加载扩展:
%load_ext rpy2.ipython
%%R
如前所述previously,当运行一个单元格
%%R
我收到以下错误:
ERROR:root:Cell magic `%%R` not found.
正在尝试
%load_ext rmagic
导致:
C:\Anaconda2\envs\ipykernel_py2\lib\site-packages\IPython\extensions\rmagic.py:11:
UserWarning: The rmagic extension in IPython has moved to `rpy2.ipython`,
please see `rpy2` documentation.
warnings.warn("The rmagic extension in IPython has moved to "
显然,该命令似乎是 "deprecated"。然后我尝试:
%load_ext rpy2.ipython
这会导致多个错误,因此我检查文件夹 C:\Anaconda2\envs\ipykernel_py2\lib\site-packages\IPython\extensions
并找到 rmagic
.py
和 .pyc
,但没有与 rpy2.ipython
相关的文件:
然后我再次尝试 %load_ext rmagic
:
The rmagic extension is already loaded. To reload it, use:
%reload_ext rmagic.py
%%R
的错误没有改变。
最后,我
pip install rpy2
当安装程序运行 Rterm.exe
that
libgcc_s_dw2-1.dll (mentioned twice)
libbz2-1.dll
liblzma-5.dll
在这台计算机上丢失了,我必须重新安装 RTerm
,我猜它是 RTools
的一部分。最终 stderr/stdout:
Collecting rpy2
Using cached rpy2-2.8.4.tar.gz
Complete output from command python setup.py egg_info:
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "c:\users\user\appdata\local\temp\pip-build-1mtkwa\rpy2\setup.py",
line 331, in <module>
ri_ext = getRinterface_ext()
File "c:\users\user\appdata\local\temp\pip-build-1mtkwa\rpy2\setup.py", line 234,
in getRinterface_ext
if rexec.version[0] == 'development' or \
File "c:\users\user\appdata\local\temp\pip-build-1mtkwa\rpy2\setup.py",
line 160, in version
universal_newlines = True)
File "C:\Anaconda2\envs\ipykernel_py2\lib\subprocess.py",
line 574, in check_output
raise CalledProcessError(retcode, cmd, output=output)
subprocess.CalledProcessError:
Command '('C:\Anaconda2\R\bin\R', '--version')'
returned non-zero exit status -1073741515
R、RStudio 和 R-Essentials(通过 conda
) 安装在我的电脑上。在 conda
安装期间,只有关于 p11-kit
(PKCS 11) 的投诉,我认为这与此无关。
运行 >jupyter troubleshoot 显示 r-base
的版本号为 0
(向下滚动)。
[31mDEPRECATION: The default format will switch to columns in the future. You can use --format=(legacy|columns) (or define a format=(legacy|columns) in your pip.conf under the [list] section) to disable this warning.[0m
$PATH:
C
\Anaconda2\Library\bin;C
\Anaconda2\Scripts;C
\Anaconda2\Library\bin;C
\Windows\system32;C
\Windows;C
\Windows\System32\Wbem;C
\Windows\System32\WindowsPowerShell\v1.0\;%JAVA%;%PYTHONPATH%;%PYTHONPATH%\Scripts;%PYTHONPATH%\Library\bin;%GITPATH%;C
\Program Files\MATLAB\R2016b\runtime\win64;C
\Program Files\MATLAB\R2016b\bin;C
\Users\user\AppData\Local\Microsoft\WindowsApps;C
\ProgramData\Oracle\Java\javapath;C
\Program Files\Git;%GITPATH\cmd%;C
\Program Files\Git\bin;C
\Anaconda2;C
\Anaconda2\Scripts;C
\Anaconda2\Library\bin;C
\ProgramData\che;C
\Program Files\R\R-3.3.2\bin;
如您所见,PYTHONPATH 已定义。这违背了 Continuum 的建议,但我认为这不是罪魁祸首。
sys.path:
C:\Anaconda2\Scripts
C:\Anaconda2
C:\Anaconda2\python27.zip
C:\Anaconda2\DLLs
C:\Anaconda2\lib
C:\Anaconda2\lib\plat-win
C:\Anaconda2\lib\lib-tk
C:\Anaconda2\lib\site-packages
C:\Anaconda2\lib\site-packages\Sphinx-1.4.6-py2.7.egg
C:\Anaconda2\lib\site-packages\win32
C:\Anaconda2\lib\site-packages\win32\lib
C:\Anaconda2\lib\site-packages\Pythonwin
C:\Anaconda2\lib\site-packages\setuptools-27.2.0-py2.7.egg
sys.executable:
C:\Anaconda2\python.exe
sys.version:
2.7.12 |Anaconda 4.2.0 (32-bit)| (default, Jun 29 2016, 11:42:13) [MSC v.1500 32 bit (Intel)]
platform.platform():
Windows-10-10.0.14393
where jupyter:
C:\Anaconda2\Scripts\jupyter.exe
pip list:
alabaster (0.7.9)
anaconda-clean (1.0)
anaconda-client (1.5.1)
anaconda-navigator (1.3.1)
argcomplete (1.0.0)
astroid (1.4.7)
astropy (1.2.1)
Babel (2.3.4)
backports-abc (0.4)
backports.shutil-get-terminal-size (1.0.0)
backports.ssl-match-hostname (3.4.0.2)
beautifulsoup4 (4.5.1)
bitarray (0.8.1)
blaze (0.10.1)
bokeh (0.12.2)
boto (2.42.0)
Bottleneck (1.1.0)
cdecimal (2.3)
cffi (1.7.0)
chest (0.2.3)
click (6.6)
cloudpickle (0.2.1)
clyent (1.2.2)
colorama (0.3.7)
comtypes (1.1.2)
conda (4.2.13)
conda-build (2.0.2)
configobj (5.0.6)
configparser (3.5.0)
contextlib2 (0.5.3)
cryptography (1.5)
cycler (0.10.0)
Cython (0.24.1)
cytoolz (0.8.0)
dask (0.11.0)
datashape (0.5.2)
decorator (4.0.10)
dill (0.2.5)
docutils (0.12)
enum34 (1.1.6)
et-xmlfile (1.0.1)
ez-setup (0.9)
fastcache (1.0.2)
filelock (2.0.6)
Flask (0.11.1)
Flask-Cors (2.1.2)
funcsigs (1.0.2)
functools32 (3.2.3.post2)
futures (3.0.5)
gevent (1.1.2)
greenlet (0.4.10)
grin (1.2.1)
h5py (2.6.0)
HeapDict (1.0.0)
idna (2.1)
imagesize (0.7.1)
ipaddress (1.0.16)
ipykernel (4.5.0)
ipython (5.1.0)
ipython-genutils (0.1.0)
ipywidgets (5.2.2)
itsdangerous (0.24)
jdcal (1.2)
jedi (0.9.0)
Jinja2 (2.8)
jsonschema (2.5.1)
jupyter (1.0.0)
jupyter-client (4.4.0)
jupyter-console (5.0.0)
jupyter-core (4.2.0)
lazy-object-proxy (1.2.1)
llvmlite (0.13.0)
locket (0.2.0)
lxml (3.6.4)
MarkupSafe (0.23)
matplotlib (1.5.3)
menuinst (1.4.1)
mistune (0.7.3)
mpmath (0.19)
multipledispatch (0.4.8)
nb-anacondacloud (1.2.0)
nb-conda (2.0.0)
nb-conda-kernels (2.0.0)
nbconvert (4.2.0)
nbformat (4.1.0)
nbpresent (3.0.2)
networkx (1.11)
nltk (3.2.1)
nose (1.3.7)
notebook (4.2.3)
numba (0.28.1+0.gfe99fbc.dirty)
numexpr (2.6.1)
numpy (1.11.1)
odo (0.5.0)
openpyxl (2.3.2)
pandas (0.18.1)
partd (0.3.6)
path.py (0.0.0)
pathlib2 (2.1.0)
patsy (0.4.1)
pep8 (1.7.0)
pickleshare (0.7.4)
Pillow (3.3.1)
pip (9.0.1)
pkginfo (1.3.2)
ply (3.9)
prompt-toolkit (1.0.9)
psutil (4.3.1)
py (1.4.31)
pyasn1 (0.1.9)
pycosat (0.6.1)
pycparser (2.14)
pycrypto (2.6.1)
pycurl (7.43.0)
pyflakes (1.3.0)
Pygments (2.1.3)
pylint (1.5.4)
pyOpenSSL (16.0.0)
pyparsing (2.1.4)
pytest (2.9.2)
python-dateutil (2.5.3)
pytz (2016.6.1)
pywin32 (220)
PyYAML (3.12)
pyzmq (15.4.0)
QtAwesome (0.3.3)
qtconsole (4.2.1)
QtPy (1.1.2)
requests (2.11.1)
rope (0.9.4)
ruamel-yaml (-VERSION)
scikit-image (0.12.3)
scikit-learn (0.17.1)
scipy (0.18.1)
setuptools (27.2.0)
simplegeneric (0.8.1)
singledispatch (3.4.0.3)
six (1.10.0)
snowballstemmer (1.2.1)
sockjs-tornado (1.0.3)
sphinx (1.4.6)
spyder (3.0.0)
SQLAlchemy (1.0.13)
statsmodels (0.6.1)
sympy (1.0)
tables (3.2.2)
toolz (0.8.0)
tornado (4.4.1)
traitlets (4.3.0)
unicodecsv (0.14.1)
wcwidth (0.1.7)
Werkzeug (0.11.11)
wheel (0.29.0)
widgetsnbextension (1.2.6)
win-unicode-console (0.5)
wrapt (1.10.6)
xlrd (1.0.0)
XlsxWriter (0.9.3)
xlwings (0.10.0)
xlwt (1.1.2)
摘录:>>conda 列表:
# packages in environment at C:\Anaconda2:
#
r 3.3.1 r3.3.1_0 r
r-assertthat 0.1 r3.3.1_2 r
r-base 3.3.1 0 r
r-base64enc 0.1_3 r3.3.1_0 r
r-bh 1.60.0_2 r3.3.1_0 r
r-bitops 1.0_6 r3.3.1_2 r
r-boot 1.3_18 r3.3.1_0 r
r-car 2.1_2 r3.3.1_0 r
r-caret 6.0_70 r3.3.1_0 r
r-catools 1.17.1 r3.3.1_2 r
r-chron 2.3_47 r3.3.1_0 r
r-class 7.3_14 r3.3.1_0 r
r-cluster 2.0.4 r3.3.1_0 r
r-codetools 0.2_14 r3.3.1_0 r
r-colorspace 1.2_6 r3.3.1_0 r
r-crayon 1.3.1 r3.3.1_0 r
r-curl 0.9.7 r3.3.1_0 r
r-data.table 1.9.6 r3.3.1_0 r
r-dbi 0.4_1 r3.3.1_0 r
r-dichromat 2.0_0 r3.3.1_2 r
r-digest 0.6.9 r3.3.1_0 r
r-dplyr 0.4.3 r3.3.1_0 r
r-essentials 1.4.2 r3.3.1_0 r
r-evaluate 0.9 r3.3.1_0 r
r-foreach 1.4.3 r3.3.1_0 r
r-foreign 0.8_66 r3.3.1_0 r
r-formatr 1.4 r3.3.1_0 r
r-ggplot2 2.1.0 r3.3.1_0 r
r-gistr 0.3.6 r3.3.1_0 r
r-glmnet 2.0_5 r3.3.1_0 r
r-gtable 0.2.0 r3.3.1_0 r
r-hexbin 1.27.1 r3.3.1_0 r
r-highr 0.6 r3.3.1_0 r
r-htmltools 0.3.5 r3.3.1_0 r
r-htmlwidgets 0.6 r3.3.1_0 r
r-httpuv 1.3.3 r3.3.1_0 r
r-httr 1.2.0 r3.3.1_0 r
r-irdisplay 0.4.3 r3.3.1_2 r
r-irkernel 0.7 r3.3.1_2 r
r-iterators 1.0.8 r3.3.1_0 r
r-jsonlite 0.9.22 r3.3.1_0 r
r-kernsmooth 2.23_15 r3.3.1_0 r
r-knitr 1.13 r3.3.1_0 r
r-labeling 0.3 r3.3.1_2 r
r-lattice 0.20_33 r3.3.1_0 r
r-lazyeval 0.2.0 r3.3.1_0 r
r-lme4 1.1_12 r3.3.1_0 r
r-magrittr 1.5 r3.3.1_2 r
r-maps 3.1.0 r3.3.1_0 r
r-markdown 0.7.7 r3.3.1_2 r
r-mass 7.3_45 r3.3.1_0 r
r-matrix 1.2_6 r3.3.1_0 r
r-matrixmodels 0.4_1 r3.3.1_0 r
r-memoise 1.0.0 r3.3.1_0 r
r-mgcv 1.8_12 r3.3.1_0 r
r-mime 0.4 r3.3.1_0 r
r-minqa 1.2.4 r3.3.1_2 r
r-munsell 0.4.3 r3.3.1_0 r
r-nlme 3.1_128 r3.3.1_0 r
r-nloptr 1.0.4 r3.3.1_2 r
r-nnet 7.3_12 r3.3.1_0 r
r-openssl 0.9.4 r3.3.1_0 r
r-pbdzmq 0.2_3 r3.3.1_0 r
r-pbkrtest 0.4_6 r3.3.1_0 r
r-plyr 1.8.4 r3.3.1_0 r
r-pryr 0.1.2 r3.3.1_0 r
r-quantmod 0.4_5 r3.3.1_2 r
r-quantreg 5.26 r3.3.1_0 r
r-r6 2.1.2 r3.3.1_0 r
r-randomforest 4.6_12 r3.3.1_0 r
r-rbokeh 0.4.2 r3.3.1_0 r
r-rcolorbrewer 1.1_2 r3.3.1_2 r
r-rcpp 0.12.5 r3.3.1_0 r
r-rcppeigen 0.3.2.8.1 r3.3.1_0 r
r-recommended 3.3.1 r3.3.1_0 r
r-repr 0.7 r3.3.1_0 r
r-reshape2 1.4.1 r3.3.1_2 r
r-rmarkdown 0.9.6 r3.3.1_0 r
r-rpart 4.1_10 r3.3.1_0 r
r-scales 0.4.0 r3.3.1_0 r
r-shiny 0.13.2 r3.3.1_0 r
r-sparsem 1.7 r3.3.1_0 r
r-spatial 7.3_11 r3.3.1_0 r
r-stringi 1.1.1 r3.3.1_0 r
r-stringr 1.0.0 r3.3.1_0 r
r-survival 2.39_4 r3.3.1_0 r
r-tibble 1.0 r3.3.1_0 r
r-tidyr 0.5.1 r3.3.1_0 r
r-ttr 0.23_1 r3.3.1_0 r
r-uuid 0.1_2 r3.3.1_0 r
r-xtable 1.8_2 r3.3.1_0 r
r-xts 0.9_7 r3.3.1_2 r
r-yaml 2.1.13 r3.3.1_2 r
r-zoo 1.7_13 r3.3.1_0 r
我也安装了 Sage。但是,它是从虚拟框运行的,目前不是 运行。
我不确定,但我认为 GNU GCC、mingw、and/or RTools 打破了与 R
的绑定,因为 Continuum 当前 dist 中的一些错误。同时,我不知道 R-essentials 是否与 %
.
魔法在哪里?
显然 rpy2 正在接管 IPython R 魔法扩展的角色。可能有问题的是您试图通过 pip 安装 rpy2,而不是在 IPython 环境中使用 miniconda。我从网络的不同部分听说 [下面的参考资料] 您需要在您的 conda 环境中安装 rpy2 才能使链接正常工作。它也可能会解决您的 .dll 查找问题。
我的建议(Windows):
activate ipykernel_py2
conda install -c r rpy2
如果效果不错,试试:
jupyter notebook
重要的是在 运行 jupyter 时处于 ipykernel_py2 环境中。
参考:
如果您已经完成 pip install rpy2
那么您需要在使用前加载扩展:
%load_ext rpy2.ipython
%%R