在 R 中组合多个 MySQL 表的最佳方法

Question

在 R 中组合多个 MySQL table 的最佳方法是什么？例如，我需要 rbind 14 个大的 `MySQL tables（每个 >100k 行乘以 100 列）。我尝试了下面的方法，它消耗了我的大部分内存并从 MySQL 中超时。我想知道是否有替代解决方案？我不需要获取整个 table，只需要将整个 table 按几个变量分组并计算一些指标。

station_tbl_t <- dbSendQuery(my_db, "select * from tbl_r3_300ft
                  union all
                  select * from tbl_r4_350ft
                  union all
                  select * from tbl_r5_400ft
                  union all
                  select * from tbl_r6_500ft
                  union all
                  select * from tbl_r7_600ft
                  union all
                  select * from tbl_r8_700ft
                  union all
                  select * from tbl_r9_800ft
                  union all
                  select * from tbl_r10_900ft
                  union all
                  select * from tbl_r11_1000ft
                  union all
                  select * from tbl_r12_1200ft
                  union all
                  select * from tbl_r13_1400ft
                  union all
                  select * from tbl_r14_1600ft
                  union all
                  select * from tbl_r15_1800ft
                  union all
                  select * from tbl_r16_2000ft
                  ")

Answer 1

考虑迭代导入 MySQL table 数据，然后使用 R 进行行绑定。并确保 select 需要的列以节省开销：

tbls <- c("tbl_r3_300ft", "tbl_r4_350ft", "tbl_r5_400ft", 
          "tbl_r6_500ft", "tbl_r7_600ft", "tbl_r8_700ft", 
          "tbl_r9_800ft", "tbl_r10_900ft", "tbl_r11_1000ft", 
          "tbl_r12_1200ft", "tbl_r13_1400ft", "tbl_r14_1600ft", 
          "tbl_r15_1800ft", "tbl_r16_2000ft")

sql <- "SELECT Col1, Col2, Col3 FROM" 

dfList <- lapply(paste(sql, tbls), function(s) {
             tryCatch({ return(dbGetQuery(my_db, s)) 
                      }, error = function(e) return(as.character(e)))
          })

# ROW BIND VERSIONS ACROSS PACKAGES
master_df <- base::do.call(rbind, dfList)
master_df <- plyr::rbind.fill(dfList)
master_df <- dplyr::bind_rows(dfList)
master_df <- data.table::rbindlist(dfList)

在 R 中组合多个 MySQL 表的最佳方法

Best approach to combine multiple MySQL tables in R

mysql

r

rmysql

dplyr