"GetImage" 和 "Update" 的 VTK 更改
VTK changes for "GetImage" and "Update"
我正在尝试使用 Python 在 3DSlicer 中进行扩展编程。
在线有a tutorial。不幸的是，第三个示例脚本 "HelloSharpen" 存在问题。我做了他们所做的完全相同的事情，但我得到了这个错误：
Traceback (most recent call last):
File "C:/Users/johan/Desktop/HelloPythonSlicer4/helloPython/code/HelloSharpen.py", line 105, in onApply
laplacian.SetInput(inputVolume.GetImageData())
AttributeError: 'vtkImagingGeneralPython.vtkImageLaplacian' object has no attribute 'SetInput'
我通过将 laplacian.SetInput(inputVolume.GetImageData()) 更改为 laplacian.SetInputData(inputVolume.GetImageData()) 来解决这个问题，因为我读到他们在较新版本的 VTK 中更改了它。
然而，当我尝试 运行 时，出现了一个新错误：
Traceback (most recent call last):
File "C:/Users/johan/Desktop/HelloPythonSlicer4/helloPython/code/HelloSharpen.py", line 107, in onApply
laplacian.GetOutput().Update()
AttributeError: 'vtkCommonDataModelPython.vtkImageData' object has no attribute 'Update'
似乎是 laplacian.GetOutput().Update() 引起了问题
如果他们在较新版本的 VTK 中也更改了此内容，我试图在 Internet 上查找一些内容，但我找不到任何内容。我试图将其更改为 "UpdateData" 但这不起作用。
你知道他们是否也改变了这个，如果是，你知道我应该用什么来代替它吗？
这是 "HelloSharpen" 的完整代码：
from __main__ import vtk, qt, ctk, slicer
#
# HelloSharpen
#
class HelloSharpen:
def __init__(self, parent):
parent.title = "Hello Python Part D - Sharpen"
parent.categories = ["Examples"]
parent.dependencies = []
parent.contributors = ["Jean-Christophe Fillion-Robin (Kitware)",
"Steve Pieper (Isomics)",
"Sonia Pujol (BWH)"] # replace with "Firstname Lastname (Org)"
parent.helpText = """
Example of scripted loadable extension for the HelloSharpen tutorial.
"""
parent.acknowledgementText = """
This file was originally developed by Jean-Christophe Fillion-Robin, Kitware Inc.,
Steve Pieper, Isomics, Inc., and Sonia Pujol, Brigham and Women's Hospital and was
partially funded by NIH grant 3P41RR013218-12S1 (NAC) and is part of the National Alliance
for Medical Image Computing (NA-MIC), funded by the National Institutes of Health through the
NIH Roadmap for Medical Research, Grant U54 EB005149.""" # replace with organization, grant and thanks.
self.parent = parent
#
# qHelloPythonWidget
#
class HelloSharpenWidget:
def __init__(self, parent = None):
if not parent:
self.parent = slicer.qMRMLWidget()
self.parent.setLayout(qt.QVBoxLayout())
self.parent.setMRMLScene(slicer.mrmlScene)
else:
self.parent = parent
self.layout = self.parent.layout()
if not parent:
self.setup()
self.parent.show()
def setup(self):
# Collapsible button
self.laplaceCollapsibleButton = ctk.ctkCollapsibleButton()
self.laplaceCollapsibleButton.text = "Sharpen Operator"
self.layout.addWidget(self.laplaceCollapsibleButton)
# Layout within the laplace collapsible button
self.laplaceFormLayout = qt.QFormLayout(self.laplaceCollapsibleButton)
#
# the volume selectors
#
self.inputFrame = qt.QFrame(self.laplaceCollapsibleButton)
self.inputFrame.setLayout(qt.QHBoxLayout())
self.laplaceFormLayout.addWidget(self.inputFrame)
self.inputSelector = qt.QLabel("Input Volume: ", self.inputFrame)
self.inputFrame.layout().addWidget(self.inputSelector)
self.inputSelector = slicer.qMRMLNodeComboBox(self.inputFrame)
self.inputSelector.nodeTypes = ( ("vtkMRMLScalarVolumeNode"), "" )
self.inputSelector.addEnabled = False
self.inputSelector.removeEnabled = False
self.inputSelector.setMRMLScene( slicer.mrmlScene )
self.inputFrame.layout().addWidget(self.inputSelector)
self.outputFrame = qt.QFrame(self.laplaceCollapsibleButton)
self.outputFrame.setLayout(qt.QHBoxLayout())
self.laplaceFormLayout.addWidget(self.outputFrame)
self.outputSelector = qt.QLabel("Output Volume: ", self.outputFrame)
self.outputFrame.layout().addWidget(self.outputSelector)
self.outputSelector = slicer.qMRMLNodeComboBox(self.outputFrame)
self.outputSelector.nodeTypes = ( ("vtkMRMLScalarVolumeNode"), "" )
self.outputSelector.setMRMLScene( slicer.mrmlScene )
self.outputFrame.layout().addWidget(self.outputSelector)
self.sharpen = qt.QCheckBox("Sharpen", self.laplaceCollapsibleButton)
self.sharpen.toolTip = "When checked, subtract laplacian from input volume"
self.sharpen.checked = True
self.laplaceFormLayout.addWidget(self.sharpen)
# Apply button
laplaceButton = qt.QPushButton("Apply")
laplaceButton.toolTip = "Run the Laplace or Sharpen Operator."
self.laplaceFormLayout.addWidget(laplaceButton)
laplaceButton.connect('clicked(bool)', self.onApply)
# Add vertical spacer
self.layout.addStretch(1)
# Set local var as instance attribute
self.laplaceButton = laplaceButton
def onApply(self):
inputVolume = self.inputSelector.currentNode()
outputVolume = self.outputSelector.currentNode()
if not (inputVolume and outputVolume):
qt.QMessageBox.critical(
slicer.util.mainWindow(),
'Sharpen', 'Input and output volumes are required for Laplacian')
return
# run the filter
laplacian = vtk.vtkImageLaplacian()
laplacian.SetInputData(inputVolume.GetImageData())
laplacian.SetDimensionality(3)
laplacian.GetOutput().Update()
ijkToRAS = vtk.vtkMatrix4x4()
inputVolume.GetIJKToRASMatrix(ijkToRAS)
outputVolume.SetIJKToRASMatrix(ijkToRAS)
outputVolume.SetAndObserveImageData(laplacian.GetOutput())
# optionally subtract laplacian from original image
if self.sharpen.checked:
parameters = {}
parameters['inputVolume1'] = inputVolume.GetID()
parameters['inputVolume2'] = outputVolume.GetID()
parameters['outputVolume'] = outputVolume.GetID()
slicer.cli.run( slicer.modules.subtractscalarvolumes, None, parameters, wait_for_completion=True )
selectionNode = slicer.app.applicationLogic().GetSelectionNode()
selectionNode.SetReferenceActiveVolumeID(outputVolume.GetID())
slicer.app.applicationLogic().PropagateVolumeSelection(0)
TL;DR 将 laplacian.GetOutput().Update() 更改为 laplacian.Update().
解释：
根据 this link, there was a major change introduced in VTK 6. In summary, newer versions of VTK have separated algorithms and the data in two different class hierarchies. In newer versions of VTK, the Update() function can be called only on objects which have been derived from the vtkAlgorithm class. You can look at the inheritance diagram of vtkImageLaplacian here，它确实源自 vtkAlgorithm class。所以 laplacian.Update() 会起作用。
顾名思义vtkImageData是一个数据对象。 laplacian.GetOutput() returns 一个 vtkImageData 对象，这就是为什么你不能在其上调用 Update() 函数，因此你会得到错误。
我正在尝试使用 Python 在 3DSlicer 中进行扩展编程。 在线有a tutorial。不幸的是，第三个示例脚本 "HelloSharpen" 存在问题。我做了他们所做的完全相同的事情，但我得到了这个错误：
Traceback (most recent call last):
File "C:/Users/johan/Desktop/HelloPythonSlicer4/helloPython/code/HelloSharpen.py", line 105, in onApply
laplacian.SetInput(inputVolume.GetImageData())
AttributeError: 'vtkImagingGeneralPython.vtkImageLaplacian' object has no attribute 'SetInput'
我通过将 laplacian.SetInput(inputVolume.GetImageData()) 更改为 laplacian.SetInputData(inputVolume.GetImageData()) 来解决这个问题，因为我读到他们在较新版本的 VTK 中更改了它。
然而，当我尝试 运行 时，出现了一个新错误：
Traceback (most recent call last):
File "C:/Users/johan/Desktop/HelloPythonSlicer4/helloPython/code/HelloSharpen.py", line 107, in onApply
laplacian.GetOutput().Update()
AttributeError: 'vtkCommonDataModelPython.vtkImageData' object has no attribute 'Update'
似乎是 laplacian.GetOutput().Update() 引起了问题
如果他们在较新版本的 VTK 中也更改了此内容，我试图在 Internet 上查找一些内容，但我找不到任何内容。我试图将其更改为 "UpdateData" 但这不起作用。
你知道他们是否也改变了这个，如果是，你知道我应该用什么来代替它吗？
这是 "HelloSharpen" 的完整代码：
from __main__ import vtk, qt, ctk, slicer
#
# HelloSharpen
#
class HelloSharpen:
def __init__(self, parent):
parent.title = "Hello Python Part D - Sharpen"
parent.categories = ["Examples"]
parent.dependencies = []
parent.contributors = ["Jean-Christophe Fillion-Robin (Kitware)",
"Steve Pieper (Isomics)",
"Sonia Pujol (BWH)"] # replace with "Firstname Lastname (Org)"
parent.helpText = """
Example of scripted loadable extension for the HelloSharpen tutorial.
"""
parent.acknowledgementText = """
This file was originally developed by Jean-Christophe Fillion-Robin, Kitware Inc.,
Steve Pieper, Isomics, Inc., and Sonia Pujol, Brigham and Women's Hospital and was
partially funded by NIH grant 3P41RR013218-12S1 (NAC) and is part of the National Alliance
for Medical Image Computing (NA-MIC), funded by the National Institutes of Health through the
NIH Roadmap for Medical Research, Grant U54 EB005149.""" # replace with organization, grant and thanks.
self.parent = parent
#
# qHelloPythonWidget
#
class HelloSharpenWidget:
def __init__(self, parent = None):
if not parent:
self.parent = slicer.qMRMLWidget()
self.parent.setLayout(qt.QVBoxLayout())
self.parent.setMRMLScene(slicer.mrmlScene)
else:
self.parent = parent
self.layout = self.parent.layout()
if not parent:
self.setup()
self.parent.show()
def setup(self):
# Collapsible button
self.laplaceCollapsibleButton = ctk.ctkCollapsibleButton()
self.laplaceCollapsibleButton.text = "Sharpen Operator"
self.layout.addWidget(self.laplaceCollapsibleButton)
# Layout within the laplace collapsible button
self.laplaceFormLayout = qt.QFormLayout(self.laplaceCollapsibleButton)
#
# the volume selectors
#
self.inputFrame = qt.QFrame(self.laplaceCollapsibleButton)
self.inputFrame.setLayout(qt.QHBoxLayout())
self.laplaceFormLayout.addWidget(self.inputFrame)
self.inputSelector = qt.QLabel("Input Volume: ", self.inputFrame)
self.inputFrame.layout().addWidget(self.inputSelector)
self.inputSelector = slicer.qMRMLNodeComboBox(self.inputFrame)
self.inputSelector.nodeTypes = ( ("vtkMRMLScalarVolumeNode"), "" )
self.inputSelector.addEnabled = False
self.inputSelector.removeEnabled = False
self.inputSelector.setMRMLScene( slicer.mrmlScene )
self.inputFrame.layout().addWidget(self.inputSelector)
self.outputFrame = qt.QFrame(self.laplaceCollapsibleButton)
self.outputFrame.setLayout(qt.QHBoxLayout())
self.laplaceFormLayout.addWidget(self.outputFrame)
self.outputSelector = qt.QLabel("Output Volume: ", self.outputFrame)
self.outputFrame.layout().addWidget(self.outputSelector)
self.outputSelector = slicer.qMRMLNodeComboBox(self.outputFrame)
self.outputSelector.nodeTypes = ( ("vtkMRMLScalarVolumeNode"), "" )
self.outputSelector.setMRMLScene( slicer.mrmlScene )
self.outputFrame.layout().addWidget(self.outputSelector)
self.sharpen = qt.QCheckBox("Sharpen", self.laplaceCollapsibleButton)
self.sharpen.toolTip = "When checked, subtract laplacian from input volume"
self.sharpen.checked = True
self.laplaceFormLayout.addWidget(self.sharpen)
# Apply button
laplaceButton = qt.QPushButton("Apply")
laplaceButton.toolTip = "Run the Laplace or Sharpen Operator."
self.laplaceFormLayout.addWidget(laplaceButton)
laplaceButton.connect('clicked(bool)', self.onApply)
# Add vertical spacer
self.layout.addStretch(1)
# Set local var as instance attribute
self.laplaceButton = laplaceButton
def onApply(self):
inputVolume = self.inputSelector.currentNode()
outputVolume = self.outputSelector.currentNode()
if not (inputVolume and outputVolume):
qt.QMessageBox.critical(
slicer.util.mainWindow(),
'Sharpen', 'Input and output volumes are required for Laplacian')
return
# run the filter
laplacian = vtk.vtkImageLaplacian()
laplacian.SetInputData(inputVolume.GetImageData())
laplacian.SetDimensionality(3)
laplacian.GetOutput().Update()
ijkToRAS = vtk.vtkMatrix4x4()
inputVolume.GetIJKToRASMatrix(ijkToRAS)
outputVolume.SetIJKToRASMatrix(ijkToRAS)
outputVolume.SetAndObserveImageData(laplacian.GetOutput())
# optionally subtract laplacian from original image
if self.sharpen.checked:
parameters = {}
parameters['inputVolume1'] = inputVolume.GetID()
parameters['inputVolume2'] = outputVolume.GetID()
parameters['outputVolume'] = outputVolume.GetID()
slicer.cli.run( slicer.modules.subtractscalarvolumes, None, parameters, wait_for_completion=True )
selectionNode = slicer.app.applicationLogic().GetSelectionNode()
selectionNode.SetReferenceActiveVolumeID(outputVolume.GetID())
slicer.app.applicationLogic().PropagateVolumeSelection(0)
TL;DR 将 laplacian.GetOutput().Update() 更改为 laplacian.Update().
解释：
根据 this link, there was a major change introduced in VTK 6. In summary, newer versions of VTK have separated algorithms and the data in two different class hierarchies. In newer versions of VTK, the Update() function can be called only on objects which have been derived from the vtkAlgorithm class. You can look at the inheritance diagram of vtkImageLaplacian here，它确实源自 vtkAlgorithm class。所以 laplacian.Update() 会起作用。
顾名思义vtkImageData是一个数据对象。 laplacian.GetOutput() returns 一个 vtkImageData 对象，这就是为什么你不能在其上调用 Update() 函数，因此你会得到错误。