如何在 conda 中静音或抑制 gfortran(或 clang?)后端?
How to silence or suppress gfortran (or clang?) backend in conda?
我一直致力于构建一个非常特殊的 conda 环境,专为 python
和 R
设计,使用 rpy2
进行串扰。我提出的安装正确 R
软件包的方法如下:
# install_main_environment.sh
now=$(date +"%T")
echo "Start Time: $now"
## Create Main Environment (OSX-64)
conda create -n python3 python=3 --yes
source activate python3
## Jupyter
conda install jupyterlab --yes
## R
conda install -c r r --yes
conda install -c r r-essentials --yes
conda install -c r rstudio --yes
conda install gfortran_osx-64 --yes
conda install -c anaconda clangxx_osx-64 --yes
conda install rpy2 --yes
## Install Python Packages
source ./install_python_packages.sh
## Install R Packages
RScript ./install_r_packages.r
# End
now=$(date +"%T")
echo "End Time: $now"
然而,其中一行使后端变得非常冗长,所以每次我 source/deactivate 一个环境或安装一个包时,我都会得到一个非常冗长的后端。
我怎样才能抑制这个或永久静音额外的文本? 在我的 bash 配置文件中,当我激活我的环境时,我将 stderr & stdout 指向 /dev/null source activate python3 > /dev/null 2>&1
但这只是一个不通用的补丁。
我的两台工作电脑都存在这种情况:
OSX 10.11.6 (El Capitan)
和我的个人电脑 OSX Sierra
。
下面是我所指的输出示例:
jespinozlt-osx:~ jespinoz$ source activate python3
INFO: activate-gfortran_osx-64.sh made the following environmental changes:
+DEBUG_FFLAGS=-march=nocona -mtune=core2 -ftree-vectorize -fPIC -fstack-protector -O2 -pipe -march=nocona -mtune=core2 -ftree-vectorize -fPIC -fstack-protector -O2 -pipe -Og -g -Wall -Wextra -fcheck=all -fbacktrace -fimplicit-none -fvar-tracking-assignments
+F95=/Users/jespinoz/anaconda/envs/python3/bin/x86_64-apple-darwin13.4.0-gfortran
+FC=/Users/jespinoz/anaconda/envs/python3/bin/x86_64-apple-darwin13.4.0-gfortran
+FFLAGS=-march=nocona -mtune=core2 -ftree-vectorize -fPIC -fstack-protector -O2 -pipe
+FORTRANFLAGS=-march=nocona -mtune=core2 -ftree-vectorize -fPIC -fstack-protector -O2 -pipe
+GFORTRAN=/Users/jespinoz/anaconda/envs/python3/bin/x86_64-apple-darwin13.4.0-gfortran
INFO: activate_clang_osx-64.sh made the following environmental changes:
+AR=/Users/jespinoz/anaconda/envs/python3/bin/x86_64-apple-darwin13.4.0-ar
+AS=/Users/jespinoz/anaconda/envs/python3/bin/x86_64-apple-darwin13.4.0-as
+CC=x86_64-apple-darwin13.4.0-clang
+CFLAGS=-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe
+CHECKSYMS=/Users/jespinoz/anaconda/envs/python3/bin/x86_64-apple-darwin13.4.0-checksyms
+CLANG=/Users/jespinoz/anaconda/envs/python3/bin/x86_64-apple-darwin13.4.0-clang
+CODESIGN_ALLOCATE=/Users/jespinoz/anaconda/envs/python3/bin/x86_64-apple-darwin13.4.0-codesign_allocate
+CONDA_BUILD_SYSROOT=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk
+CPPFLAGS=-D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9
+DEBUG_CFLAGS=-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -Og -g -Wall -Wextra
+INDR=/Users/jespinoz/anaconda/envs/python3/bin/x86_64-apple-darwin13.4.0-indr
+INSTALL_NAME_TOOL=/Users/jespinoz/anaconda/envs/python3/bin/x86_64-apple-darwin13.4.0-install_name_tool
+LD=/Users/jespinoz/anaconda/envs/python3/bin/x86_64-apple-darwin13.4.0-ld
+LDFLAGS=-Wl,-pie -Wl,-headerpad_max_install_names -Wl,-dead_strip_dylibs
+LDFLAGS_LD=-pie -headerpad_max_install_names -dead_strip_dylibs
+LIBTOOL=/Users/jespinoz/anaconda/envs/python3/bin/x86_64-apple-darwin13.4.0-libtool
+LIPO=/Users/jespinoz/anaconda/envs/python3/bin/x86_64-apple-darwin13.4.0-lipo
+NM=/Users/jespinoz/anaconda/envs/python3/bin/x86_64-apple-darwin13.4.0-nm
+NMEDIT=/Users/jespinoz/anaconda/envs/python3/bin/x86_64-apple-darwin13.4.0-nmedit
+OTOOL=/Users/jespinoz/anaconda/envs/python3/bin/x86_64-apple-darwin13.4.0-otool
+PAGESTUFF=/Users/jespinoz/anaconda/envs/python3/bin/x86_64-apple-darwin13.4.0-pagestuff
+RANLIB=/Users/jespinoz/anaconda/envs/python3/bin/x86_64-apple-darwin13.4.0-ranlib
+REDO_PREBINDING=/Users/jespinoz/anaconda/envs/python3/bin/x86_64-apple-darwin13.4.0-redo_prebinding
+SEGEDIT=/Users/jespinoz/anaconda/envs/python3/bin/x86_64-apple-darwin13.4.0-segedit
+SEG_ADDR_TABLE=/Users/jespinoz/anaconda/envs/python3/bin/x86_64-apple-darwin13.4.0-seg_addr_table
+SEG_HACK=/Users/jespinoz/anaconda/envs/python3/bin/x86_64-apple-darwin13.4.0-seg_hack
+SIZE=/Users/jespinoz/anaconda/envs/python3/bin/x86_64-apple-darwin13.4.0-size
+STRINGS=/Users/jespinoz/anaconda/envs/python3/bin/x86_64-apple-darwin13.4.0-strings
+STRIP=/Users/jespinoz/anaconda/envs/python3/bin/x86_64-apple-darwin13.4.0-strip
+_PYTHON_SYSCONFIGDATA_NAME=_sysconfigdata_x86_64_apple_darwin13_4_0
INFO: activate_clangxx_osx-64.sh made the following environmental changes:
+CLANGXX=/Users/jespinoz/anaconda/envs/python3/bin/x86_64-apple-darwin13.4.0-clang++
+CXX=x86_64-apple-darwin13.4.0-clang++
+CXXFLAGS=-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -std=c++14 -fmessage-length=0
+DEBUG_CXXFLAGS=-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -std=c++14 -fmessage-length=0 -Og -g -Wall -Wextra
下面是指向 pastebin
的链接,用于请求 outputs/scripts:
正如 Tarun Lalwani 在评论中所建议的那样:
标准输出
bash -xlc "source activate python3" 1> activate_output.o
标准错误
bash -xlc "source activate python3" 2> activate_output.e
Trishansh Bhardwaj 和 Tarun Lalwani 在评论中请求的脚本:
脚本
如果您查看以下文件夹
/Users/jespinoz/anaconda/envs/python3/etc/conda
里面有一个 activate.d
和 deactivate.d
文件夹,在 activate
和 deactivate
期间执行
这些文件有以下代码部分
if [ $? -ne 0 ]; then
echo "ERROR: $(_get_sourced_filename) failed, see above for details"
else
if [ -f /tmp/new-env-$$.txt ]; then
rm -f /tmp/new-env-$$.txt || true
fi
env > /tmp/new-env-$$.txt
echo "INFO: $(_get_sourced_filename) made the following environmental changes:"
diff -U 0 -rN /tmp/old-env-$$.txt /tmp/new-env-$$.txt | tail -n +4 | grep "^-.*\|^+.*" | grep -v "CONDA_BACKUP_" | sort
fi
rm -f /tmp/old-env-$$.txt /tmp/new-env-$$.txt || true
您需要注释这些以禁用详细输出。这段代码基本上将当前 env
保存到一个文件,然后 运行 激活码,再次捕获 env
并打印 diff
我一直致力于构建一个非常特殊的 conda 环境,专为 python
和 R
设计,使用 rpy2
进行串扰。我提出的安装正确 R
软件包的方法如下:
# install_main_environment.sh
now=$(date +"%T")
echo "Start Time: $now"
## Create Main Environment (OSX-64)
conda create -n python3 python=3 --yes
source activate python3
## Jupyter
conda install jupyterlab --yes
## R
conda install -c r r --yes
conda install -c r r-essentials --yes
conda install -c r rstudio --yes
conda install gfortran_osx-64 --yes
conda install -c anaconda clangxx_osx-64 --yes
conda install rpy2 --yes
## Install Python Packages
source ./install_python_packages.sh
## Install R Packages
RScript ./install_r_packages.r
# End
now=$(date +"%T")
echo "End Time: $now"
然而,其中一行使后端变得非常冗长,所以每次我 source/deactivate 一个环境或安装一个包时,我都会得到一个非常冗长的后端。
我怎样才能抑制这个或永久静音额外的文本? 在我的 bash 配置文件中,当我激活我的环境时,我将 stderr & stdout 指向 /dev/null source activate python3 > /dev/null 2>&1
但这只是一个不通用的补丁。
我的两台工作电脑都存在这种情况:
OSX 10.11.6 (El Capitan)
和我的个人电脑 OSX Sierra
。
下面是我所指的输出示例:
jespinozlt-osx:~ jespinoz$ source activate python3
INFO: activate-gfortran_osx-64.sh made the following environmental changes:
+DEBUG_FFLAGS=-march=nocona -mtune=core2 -ftree-vectorize -fPIC -fstack-protector -O2 -pipe -march=nocona -mtune=core2 -ftree-vectorize -fPIC -fstack-protector -O2 -pipe -Og -g -Wall -Wextra -fcheck=all -fbacktrace -fimplicit-none -fvar-tracking-assignments
+F95=/Users/jespinoz/anaconda/envs/python3/bin/x86_64-apple-darwin13.4.0-gfortran
+FC=/Users/jespinoz/anaconda/envs/python3/bin/x86_64-apple-darwin13.4.0-gfortran
+FFLAGS=-march=nocona -mtune=core2 -ftree-vectorize -fPIC -fstack-protector -O2 -pipe
+FORTRANFLAGS=-march=nocona -mtune=core2 -ftree-vectorize -fPIC -fstack-protector -O2 -pipe
+GFORTRAN=/Users/jespinoz/anaconda/envs/python3/bin/x86_64-apple-darwin13.4.0-gfortran
INFO: activate_clang_osx-64.sh made the following environmental changes:
+AR=/Users/jespinoz/anaconda/envs/python3/bin/x86_64-apple-darwin13.4.0-ar
+AS=/Users/jespinoz/anaconda/envs/python3/bin/x86_64-apple-darwin13.4.0-as
+CC=x86_64-apple-darwin13.4.0-clang
+CFLAGS=-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe
+CHECKSYMS=/Users/jespinoz/anaconda/envs/python3/bin/x86_64-apple-darwin13.4.0-checksyms
+CLANG=/Users/jespinoz/anaconda/envs/python3/bin/x86_64-apple-darwin13.4.0-clang
+CODESIGN_ALLOCATE=/Users/jespinoz/anaconda/envs/python3/bin/x86_64-apple-darwin13.4.0-codesign_allocate
+CONDA_BUILD_SYSROOT=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk
+CPPFLAGS=-D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9
+DEBUG_CFLAGS=-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -Og -g -Wall -Wextra
+INDR=/Users/jespinoz/anaconda/envs/python3/bin/x86_64-apple-darwin13.4.0-indr
+INSTALL_NAME_TOOL=/Users/jespinoz/anaconda/envs/python3/bin/x86_64-apple-darwin13.4.0-install_name_tool
+LD=/Users/jespinoz/anaconda/envs/python3/bin/x86_64-apple-darwin13.4.0-ld
+LDFLAGS=-Wl,-pie -Wl,-headerpad_max_install_names -Wl,-dead_strip_dylibs
+LDFLAGS_LD=-pie -headerpad_max_install_names -dead_strip_dylibs
+LIBTOOL=/Users/jespinoz/anaconda/envs/python3/bin/x86_64-apple-darwin13.4.0-libtool
+LIPO=/Users/jespinoz/anaconda/envs/python3/bin/x86_64-apple-darwin13.4.0-lipo
+NM=/Users/jespinoz/anaconda/envs/python3/bin/x86_64-apple-darwin13.4.0-nm
+NMEDIT=/Users/jespinoz/anaconda/envs/python3/bin/x86_64-apple-darwin13.4.0-nmedit
+OTOOL=/Users/jespinoz/anaconda/envs/python3/bin/x86_64-apple-darwin13.4.0-otool
+PAGESTUFF=/Users/jespinoz/anaconda/envs/python3/bin/x86_64-apple-darwin13.4.0-pagestuff
+RANLIB=/Users/jespinoz/anaconda/envs/python3/bin/x86_64-apple-darwin13.4.0-ranlib
+REDO_PREBINDING=/Users/jespinoz/anaconda/envs/python3/bin/x86_64-apple-darwin13.4.0-redo_prebinding
+SEGEDIT=/Users/jespinoz/anaconda/envs/python3/bin/x86_64-apple-darwin13.4.0-segedit
+SEG_ADDR_TABLE=/Users/jespinoz/anaconda/envs/python3/bin/x86_64-apple-darwin13.4.0-seg_addr_table
+SEG_HACK=/Users/jespinoz/anaconda/envs/python3/bin/x86_64-apple-darwin13.4.0-seg_hack
+SIZE=/Users/jespinoz/anaconda/envs/python3/bin/x86_64-apple-darwin13.4.0-size
+STRINGS=/Users/jespinoz/anaconda/envs/python3/bin/x86_64-apple-darwin13.4.0-strings
+STRIP=/Users/jespinoz/anaconda/envs/python3/bin/x86_64-apple-darwin13.4.0-strip
+_PYTHON_SYSCONFIGDATA_NAME=_sysconfigdata_x86_64_apple_darwin13_4_0
INFO: activate_clangxx_osx-64.sh made the following environmental changes:
+CLANGXX=/Users/jespinoz/anaconda/envs/python3/bin/x86_64-apple-darwin13.4.0-clang++
+CXX=x86_64-apple-darwin13.4.0-clang++
+CXXFLAGS=-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -std=c++14 -fmessage-length=0
+DEBUG_CXXFLAGS=-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -std=c++14 -fmessage-length=0 -Og -g -Wall -Wextra
下面是指向 pastebin
的链接,用于请求 outputs/scripts:
正如 Tarun Lalwani 在评论中所建议的那样:
标准输出
bash -xlc "source activate python3" 1> activate_output.o
标准错误
bash -xlc "source activate python3" 2> activate_output.e
Trishansh Bhardwaj 和 Tarun Lalwani 在评论中请求的脚本:
脚本
如果您查看以下文件夹
/Users/jespinoz/anaconda/envs/python3/etc/conda
里面有一个 activate.d
和 deactivate.d
文件夹,在 activate
和 deactivate
这些文件有以下代码部分
if [ $? -ne 0 ]; then
echo "ERROR: $(_get_sourced_filename) failed, see above for details"
else
if [ -f /tmp/new-env-$$.txt ]; then
rm -f /tmp/new-env-$$.txt || true
fi
env > /tmp/new-env-$$.txt
echo "INFO: $(_get_sourced_filename) made the following environmental changes:"
diff -U 0 -rN /tmp/old-env-$$.txt /tmp/new-env-$$.txt | tail -n +4 | grep "^-.*\|^+.*" | grep -v "CONDA_BACKUP_" | sort
fi
rm -f /tmp/old-env-$$.txt /tmp/new-env-$$.txt || true
您需要注释这些以禁用详细输出。这段代码基本上将当前 env
保存到一个文件,然后 运行 激活码,再次捕获 env
并打印 diff