在 redHat CentOs 7 上安装 R。几个错误和依赖项我无法克服
Install R on redHat CentOs 7. Several errors and dependencies I'm unable to overcome
我正在使用 redhat centos 7 并尝试安装 R:
sudo yum install R
Returns:
Error: Package: R-java-devel-3.5.1-1.el7.x86_64 (epel)
Requires: java-devel
Available: 1:java-1.7.0-openjdk-devel-1.7.0.171-2.6.13.2.el7.x86_64 (centos-base-prod)
java-devel = 1:1.7.0
Available: 1:java-1.7.0-openjdk-devel-1.7.0.181-2.6.14.5.el7.x86_64 (centos-updates-prod)
java-devel = 1:1.7.0
Available: 1:java-1.7.0-openjdk-devel-1.7.0.181-2.6.14.8.el7_5.x86_64 (centos-updates-prod)
java-devel = 1:1.7.0
Available: 1:java-1.7.0-openjdk-devel-1.7.0.191-2.6.15.4.el7_5.x86_64 (centos-updates-prod)
java-devel = 1:1.7.0
Available: 1:java-1.8.0-openjdk-devel-1.8.0.161-2.b14.el7.i686 (centos-base-prod)
java-devel = 1:1.8.0
Available: 1:java-1.8.0-openjdk-devel-1.8.0.171-7.b10.el7.i686 (centos-updates-prod)
java-devel = 1:1.8.0
Available: 1:java-1.8.0-openjdk-devel-1.8.0.171-8.b10.el7_5.i686 (centos-updates-prod)
java-devel = 1:1.8.0
Available: 1:java-1.8.0-openjdk-devel-1.8.0.181-3.b13.el7_5.i686 (centos-updates-prod)
java-devel = 1:1.8.0
Error: Package: R-java-3.5.1-1.el7.x86_64 (epel)
Requires: java-headless
Available: 1:java-1.7.0-openjdk-headless-1.7.0.171-2.6.13.2.el7.x86_64 (centos-base-prod)
java-headless = 1:1.7.0
Available: 1:java-1.7.0-openjdk-headless-1.7.0.181-2.6.14.5.el7.x86_64 (centos-updates-prod)
java-headless = 1:1.7.0
Available: 1:java-1.7.0-openjdk-headless-1.7.0.181-2.6.14.8.el7_5.x86_64 (centos-updates-prod)
java-headless = 1:1.7.0
Available: 1:java-1.7.0-openjdk-headless-1.7.0.191-2.6.15.4.el7_5.x86_64 (centos-updates-prod)
java-headless = 1:1.7.0
Available: 1:java-1.8.0-openjdk-headless-1.8.0.161-2.b14.el7.i686 (centos-base-prod)
java-headless = 1:1.8.0
Available: 1:java-1.8.0-openjdk-headless-1.8.0.171-7.b10.el7.i686 (centos-updates-prod)
java-headless = 1:1.8.0
Available: 1:java-1.8.0-openjdk-headless-1.8.0.171-8.b10.el7_5.i686 (centos-updates-prod)
java-headless = 1:1.8.0
Available: 1:java-1.8.0-openjdk-headless-1.8.0.181-3.b13.el7_5.i686 (centos-updates-prod)
java-headless = 1:1.8.0
根据错误信息我尝试安装java-devel:
sudo yum install java-devel
给出：
Package 1:java-1.8.0-openjdk-devel-1.8.0.181-3.b13.el7_5.x86_64 is obsoleted by 2000:gd-jdk8-1.8.0_92-fcs.x86_64 which is already installed
Nothing to do
如何安装 java-devel 以安装 R？
[编辑]
Java版本：
java -version java version "1.8.0_92" Java(TM) SE Runtime Environment (build 1.8.0_92-b14) Java HotSpot(TM) 64-Bit Server VM (build 25.92-b14, mixed mode)
[编辑]
还尝试了以下方法：
sudo yum install R-java-devel
给出：
Error: Package: R-java-devel-3.5.1-1.el7.x86_64 (epel)
Requires: java-devel
Available: 1:java-1.7.0-openjdk-devel-1.7.0.171-2.6.13.2.el7.x86_64 (centos-base-prod)
java-devel = 1:1.7.0
Available: 1:java-1.7.0-openjdk-devel-1.7.0.181-2.6.14.5.el7.x86_64 (centos-updates-prod)
java-devel = 1:1.7.0
Available: 1:java-1.7.0-openjdk-devel-1.7.0.181-2.6.14.8.el7_5.x86_64 (centos-updates-prod)
java-devel = 1:1.7.0
Available: 1:java-1.7.0-openjdk-devel-1.7.0.191-2.6.15.4.el7_5.x86_64 (centos-updates-prod)
java-devel = 1:1.7.0
Available: 1:java-1.8.0-openjdk-devel-1.8.0.161-2.b14.el7.i686 (centos-base-prod)
java-devel = 1:1.8.0
Available: 1:java-1.8.0-openjdk-devel-1.8.0.171-7.b10.el7.i686 (centos-updates-prod)
java-devel = 1:1.8.0
Available: 1:java-1.8.0-openjdk-devel-1.8.0.171-8.b10.el7_5.i686 (centos-updates-prod)
java-devel = 1:1.8.0
Available: 1:java-1.8.0-openjdk-devel-1.8.0.181-3.b13.el7_5.i686 (centos-updates-prod)
java-devel = 1:1.8.0
也尝试了特定版本：
sudo yum install java-1.8.0-openjdk-devel-1.8.0.181-3.b13.el7_5.i686
返回：
“包 1:java-1.8.0-openjdk-devel-1.8.0.181-3.b13.el7_5.i686 已被 2000:gd-jdk8-1.8.0_92-fcs 淘汰。 x86_64 已安装
无事可做。
我该如何克服这些问题？也欢迎标记建议。
[编辑]
从评论中，这是 yum repolist
的输出
Loaded plugins: changelog, fastestmirror, priorities, versionlock
Determining fastest mirrors
* epel: mirror.prgmr.com
centos-base-prod 9911/9911
centos-cpm-prod 125/125
centos-epel-prod 15503/15503
centos-extras-prod 402/402
centos-hips-prod 72/72
centos-itsec-prod 82/82
centos-pbis-prod 43/43
centos-puppet3-prod 242/242
centos-serverspec-prod 11/11
centos-updates-prod 1348/1348
centos_itsec_prod 82/82
collectd-enterprise 232/232
epel 12743/12743
gd-prod-centos-v6-64bit-scl 1121/1121
gd-prod-centos-v6-64bit-tms 163/163
gd-prod-centos-v7-64bit-base 9911/9911
gd-prod-centos-v7-64bit-epel 15503/15503
gd-prod-centos-v7-64bit-extras 402/402
gd-prod-centos-v7-64bit-hips 72/72
gd-prod-centos-v7-64bit-pan 83/83
gd-prod-centos-v7-64bit-sensu 2113/2113
gd-prod-centos-v7-64bit-updates 1348/1348
gdsnow 3/3
gutils 11/11
prod_centos_7_noarch_gd-snow 3/3
sensu-enterprise 4560/4560
yumrepos 87/87
repo id repo name status
!centos-base-prod/x86_64 centos-base-prod 9,910+1
!centos-cpm-prod/x86_64 centos-cpm-prod 125
!centos-epel-prod/x86_64 centos-epel-prod 15,503
!centos-extras-prod/x86_64 centos-extras-prod 402
!centos-hips-prod/x86_64 centos-hips-prod 72
!centos-itsec-prod/x86_64 centos-itsec-prod 82
!centos-pbis-prod/x86_64 centos-pbis-prod 43
!centos-puppet3-prod/x86_64 Centos Puppet prod Packages 242
!centos-sclo-rh/x86_64 CentOS-7 - SCLo rh 8,090
!centos-serverspec-prod/x86_64 centos-serverspec-prod 11
!centos-updates-prod/x86_64 centos-updates-prod 1,347+1
!centos_itsec_prod/x86_64 centos_itsec_prod 82
!collectd-enterprise/x86_64 Enterprise Collectd Packages 231+1
!epel/x86_64 Extra Packages for Enterprise Linux 7 - x86_64 12,743
!gd-prod-centos-v6-64bit-scl gd-prod-centos-v6-64bit-scl 1,121
!gd-prod-centos-v6-64bit-tms gd-prod-centos-v6-64bit-tms 163
!gd-prod-centos-v7-64bit-base gd-prod-centos-v7-64bit-base 9,910+1
!gd-prod-centos-v7-64bit-epel gd-prod-centos-v7-64bit-epel 15,503
!gd-prod-centos-v7-64bit-extras gd-prod-centos-v7-64bit-extras 402
!gd-prod-centos-v7-64bit-hips gd-prod-centos-v7-64bit-hips 72
!gd-prod-centos-v7-64bit-pan gd-prod-centos-v7-64bit-pan 82+1
!gd-prod-centos-v7-64bit-sensu gd-prod-centos-v7-64bit-sensu 2,113
!gd-prod-centos-v7-64bit-updates gd-prod-centos-v7-64bit-updates 1,347+1
!gdsnow prod_centos_7_noarch_gd-snow 3
!gutils/x86_64 GUtils Packages 11
!prod_centos_7_noarch_gd-snow prod_centos_7_noarch_gd-snow 3
!prod_centos_7_x86_64_saltstack prod_centos_7_x86_64_saltstack 76+26
!sensu-enterprise/x86_64 Enterprise Sensu Packages 4,560
!yumrepos Enterprise Yum Repos Repo 87
repolist: 84,336
[编辑]
根据评论仅启用 epel、base 和更新回购 yum repolist all：
之后我再次尝试 sudo yum install R
这产生了：
Error: Package: libRmath-devel-3.5.0-1.el7.x86_64 (centos-epel-prod)
Requires: libRmath = 3.5.0-1.el7
Installed: libRmath-3.5.1-1.el7.x86_64 (@epel)
libRmath = 3.5.1-1.el7
Available: libRmath-3.5.0-1.el7.x86_64 (centos-epel-prod)
libRmath = 3.5.0-1.el7
Error: Package: R-java-3.5.0-1.el7.x86_64 (centos-epel-prod)
Requires: R-core = 3.5.0-1.el7
Installed: R-core-3.5.1-1.el7.x86_64 (@epel)
R-core = 3.5.1-1.el7
Available: R-core-3.5.0-1.el7.x86_64 (centos-epel-prod)
R-core = 3.5.0-1.el7
Error: Package: 1:java-1.7.0-openjdk-1.7.0.181-2.6.14.8.el7_5.x86_64 (centos-updates-prod)
Requires: java-1.7.0-openjdk-headless = 1:1.7.0.181-2.6.14.8.el7_5
Available: 1:java-1.7.0-openjdk-headless-1.7.0.171-2.6.13.2.el7.x86_64 (centos-base-prod)
java-1.7.0-openjdk-headless = 1:1.7.0.171-2.6.13.2.el7
Available: 1:java-1.7.0-openjdk-headless-1.7.0.181-2.6.14.5.el7.x86_64 (centos-updates-prod)
java-1.7.0-openjdk-headless = 1:1.7.0.181-2.6.14.5.el7
Available: 1:java-1.7.0-openjdk-headless-1.7.0.181-2.6.14.8.el7_5.x86_64 (centos-updates-prod)
java-1.7.0-openjdk-headless = 1:1.7.0.181-2.6.14.8.el7_5
Installing: 1:java-1.7.0-openjdk-headless-1.7.0.191-2.6.15.4.el7_5.x86_64 (centos-updates-prod)
java-1.7.0-openjdk-headless = 1:1.7.0.191-2.6.15.4.el7_5
Error: Package: R-java-devel-3.5.0-1.el7.x86_64 (centos-epel-prod)
Requires: java-devel
Error: Package: R-core-devel-3.5.0-1.el7.x86_64 (centos-epel-prod)
Requires: R-core = 3.5.0-1.el7
Installed: R-core-3.5.1-1.el7.x86_64 (@epel)
R-core = 3.5.1-1.el7
Available: R-core-3.5.0-1.el7.x86_64 (centos-epel-prod)
R-core = 3.5.0-1.el7
Error: Package: 1:java-1.8.0-openjdk-1.8.0.171-7.b10.el7.x86_64 (centos-updates-prod)
Requires: java-1.8.0-openjdk-headless(x86-64) = 1:1.8.0.171-7.b10.el7
Available: 1:java-1.8.0-openjdk-headless-1.8.0.161-2.b14.el7.x86_64 (centos-base-prod)
java-1.8.0-openjdk-headless(x86-64) = 1:1.8.0.161-2.b14.el7
Available: 1:java-1.8.0-openjdk-headless-1.8.0.171-7.b10.el7.i686 (centos-updates-prod)
~java-1.8.0-openjdk-headless(x86-32) = 1:1.8.0.171-7.b10.el7
Error: Package: 1:java-1.7.0-openjdk-1.7.0.181-2.6.14.5.el7.x86_64 (centos-updates-prod)
Requires: java-1.7.0-openjdk-headless = 1:1.7.0.181-2.6.14.5.el7
Available: 1:java-1.7.0-openjdk-headless-1.7.0.171-2.6.13.2.el7.x86_64 (centos-base-prod)
java-1.7.0-openjdk-headless = 1:1.7.0.171-2.6.13.2.el7
Available: 1:java-1.7.0-openjdk-headless-1.7.0.181-2.6.14.5.el7.x86_64 (centos-updates-prod)
java-1.7.0-openjdk-headless = 1:1.7.0.181-2.6.14.5.el7
Available: 1:java-1.7.0-openjdk-headless-1.7.0.181-2.6.14.8.el7_5.x86_64 (centos-updates-prod)
java-1.7.0-openjdk-headless = 1:1.7.0.181-2.6.14.8.el7_5
Installing: 1:java-1.7.0-openjdk-headless-1.7.0.191-2.6.15.4.el7_5.x86_64 (centos-updates-prod)
java-1.7.0-openjdk-headless = 1:1.7.0.191-2.6.15.4.el7_5
Error: Package: 1:java-1.8.0-openjdk-1.8.0.171-8.b10.el7_5.x86_64 (centos-updates-prod)
Requires: java-1.8.0-openjdk-headless(x86-64) = 1:1.8.0.171-8.b10.el7_5
Available: 1:java-1.8.0-openjdk-headless-1.8.0.161-2.b14.el7.x86_64 (centos-base-prod)
java-1.8.0-openjdk-headless(x86-64) = 1:1.8.0.161-2.b14.el7
Available: 1:java-1.8.0-openjdk-headless-1.8.0.171-7.b10.el7.i686 (centos-updates-prod)
~java-1.8.0-openjdk-headless(x86-32) = 1:1.8.0.171-7.b10.el7
Available: 1:java-1.8.0-openjdk-headless-1.8.0.171-8.b10.el7_5.i686 (centos-updates-prod)
~java-1.8.0-openjdk-headless(x86-32) = 1:1.8.0.171-8.b10.el7_5
Error: Package: 1:java-1.7.0-openjdk-1.7.0.171-2.6.13.2.el7.x86_64 (centos-base-prod)
Requires: java-1.7.0-openjdk-headless = 1:1.7.0.171-2.6.13.2.el7
Available: 1:java-1.7.0-openjdk-headless-1.7.0.171-2.6.13.2.el7.x86_64 (centos-base-prod)
java-1.7.0-openjdk-headless = 1:1.7.0.171-2.6.13.2.el7
Available: 1:java-1.7.0-openjdk-headless-1.7.0.181-2.6.14.5.el7.x86_64 (centos-updates-prod)
java-1.7.0-openjdk-headless = 1:1.7.0.181-2.6.14.5.el7
Available: 1:java-1.7.0-openjdk-headless-1.7.0.181-2.6.14.8.el7_5.x86_64 (centos-updates-prod)
java-1.7.0-openjdk-headless = 1:1.7.0.181-2.6.14.8.el7_5
Installing: 1:java-1.7.0-openjdk-headless-1.7.0.191-2.6.15.4.el7_5.x86_64 (centos-updates-prod)
java-1.7.0-openjdk-headless = 1:1.7.0.191-2.6.15.4.el7_5
You could try using --skip-broken to work around the problem
You could try running: rpm -Va --nofiles --nodigest
看来您从可能 'odd' 个位置安装了有冲突的包。
1:java-1.8.0-openjdk-devel-1.8.0.181-3.b13.el7_5.i686 is obsoleted by 2000:gd-jdk8-1.8.0_92-fcs.x86_64 告诉我们 gd-jdk8 提供与 java-1.8.0-openjdk-devel 相同的东西，但 R 不喜欢那个名字，想要一个合适的 java 和 java-devel 包。
您需要做的第一件事是禁用您启用的所有这些奇怪的回购协议，只使用 epel base 和 updates 回购协议。
如果您导航到； /etc/yum.repos.d/ 您应该找到一个装满文件的文件夹。打开它们并将 enabled=1 更改为 enabled=0 这将禁用它们。
现在您应该可以 yum erase gd-jdk8 并将其与任何部门一起删除。然后你应该能够做 yum install java-devel 这应该给你正确的版本。
完成后，您将需要降级 R-core 和 libRmath 软件包，因为它出现在我们的 chat 中，您知道如何设法安装更新版本的软件包R也想要。
做； yum downgrade R-core libRmath 并向部门说 'yes'。这应该可以让您找到所需的正确版本。
最后做 yum install R，如果运气好，它应该会为您安装！
看起来很多包都是由内部仓库或其他东西提供的，因为你有很多前缀为 'gd' 的东西实际上并不像人们预期的那样 gd！我会与您的 operations/IT 团队谈谈，看看发生了什么。
最后请记住，您禁用了所有其他存储库 - 好吧，您现在可能希望重新启用它们，但是...如果您曾经做过 yum update，请务必确保您知道它将要做什么可能会尝试用那些 'gd' 前缀的包替换东西。
Yum 确实告诉您 is obsoleted 行出了什么问题。但是，当然，深入研究 deps 需要更多的知识，尤其是当您不确定自己在看什么并且它不是 'stock' 安装的 CentOS 时！
我正在使用 redhat centos 7 并尝试安装 R:
sudo yum install R
Returns:
Error: Package: R-java-devel-3.5.1-1.el7.x86_64 (epel)
Requires: java-devel
Available: 1:java-1.7.0-openjdk-devel-1.7.0.171-2.6.13.2.el7.x86_64 (centos-base-prod)
java-devel = 1:1.7.0
Available: 1:java-1.7.0-openjdk-devel-1.7.0.181-2.6.14.5.el7.x86_64 (centos-updates-prod)
java-devel = 1:1.7.0
Available: 1:java-1.7.0-openjdk-devel-1.7.0.181-2.6.14.8.el7_5.x86_64 (centos-updates-prod)
java-devel = 1:1.7.0
Available: 1:java-1.7.0-openjdk-devel-1.7.0.191-2.6.15.4.el7_5.x86_64 (centos-updates-prod)
java-devel = 1:1.7.0
Available: 1:java-1.8.0-openjdk-devel-1.8.0.161-2.b14.el7.i686 (centos-base-prod)
java-devel = 1:1.8.0
Available: 1:java-1.8.0-openjdk-devel-1.8.0.171-7.b10.el7.i686 (centos-updates-prod)
java-devel = 1:1.8.0
Available: 1:java-1.8.0-openjdk-devel-1.8.0.171-8.b10.el7_5.i686 (centos-updates-prod)
java-devel = 1:1.8.0
Available: 1:java-1.8.0-openjdk-devel-1.8.0.181-3.b13.el7_5.i686 (centos-updates-prod)
java-devel = 1:1.8.0
Error: Package: R-java-3.5.1-1.el7.x86_64 (epel)
Requires: java-headless
Available: 1:java-1.7.0-openjdk-headless-1.7.0.171-2.6.13.2.el7.x86_64 (centos-base-prod)
java-headless = 1:1.7.0
Available: 1:java-1.7.0-openjdk-headless-1.7.0.181-2.6.14.5.el7.x86_64 (centos-updates-prod)
java-headless = 1:1.7.0
Available: 1:java-1.7.0-openjdk-headless-1.7.0.181-2.6.14.8.el7_5.x86_64 (centos-updates-prod)
java-headless = 1:1.7.0
Available: 1:java-1.7.0-openjdk-headless-1.7.0.191-2.6.15.4.el7_5.x86_64 (centos-updates-prod)
java-headless = 1:1.7.0
Available: 1:java-1.8.0-openjdk-headless-1.8.0.161-2.b14.el7.i686 (centos-base-prod)
java-headless = 1:1.8.0
Available: 1:java-1.8.0-openjdk-headless-1.8.0.171-7.b10.el7.i686 (centos-updates-prod)
java-headless = 1:1.8.0
Available: 1:java-1.8.0-openjdk-headless-1.8.0.171-8.b10.el7_5.i686 (centos-updates-prod)
java-headless = 1:1.8.0
Available: 1:java-1.8.0-openjdk-headless-1.8.0.181-3.b13.el7_5.i686 (centos-updates-prod)
java-headless = 1:1.8.0
根据错误信息我尝试安装java-devel:
sudo yum install java-devel
给出：
Package 1:java-1.8.0-openjdk-devel-1.8.0.181-3.b13.el7_5.x86_64 is obsoleted by 2000:gd-jdk8-1.8.0_92-fcs.x86_64 which is already installed
Nothing to do
如何安装 java-devel 以安装 R？
[编辑]
Java版本：
java -version java version "1.8.0_92" Java(TM) SE Runtime Environment (build 1.8.0_92-b14) Java HotSpot(TM) 64-Bit Server VM (build 25.92-b14, mixed mode)
[编辑]
还尝试了以下方法：
sudo yum install R-java-devel
给出：
Error: Package: R-java-devel-3.5.1-1.el7.x86_64 (epel)
Requires: java-devel
Available: 1:java-1.7.0-openjdk-devel-1.7.0.171-2.6.13.2.el7.x86_64 (centos-base-prod)
java-devel = 1:1.7.0
Available: 1:java-1.7.0-openjdk-devel-1.7.0.181-2.6.14.5.el7.x86_64 (centos-updates-prod)
java-devel = 1:1.7.0
Available: 1:java-1.7.0-openjdk-devel-1.7.0.181-2.6.14.8.el7_5.x86_64 (centos-updates-prod)
java-devel = 1:1.7.0
Available: 1:java-1.7.0-openjdk-devel-1.7.0.191-2.6.15.4.el7_5.x86_64 (centos-updates-prod)
java-devel = 1:1.7.0
Available: 1:java-1.8.0-openjdk-devel-1.8.0.161-2.b14.el7.i686 (centos-base-prod)
java-devel = 1:1.8.0
Available: 1:java-1.8.0-openjdk-devel-1.8.0.171-7.b10.el7.i686 (centos-updates-prod)
java-devel = 1:1.8.0
Available: 1:java-1.8.0-openjdk-devel-1.8.0.171-8.b10.el7_5.i686 (centos-updates-prod)
java-devel = 1:1.8.0
Available: 1:java-1.8.0-openjdk-devel-1.8.0.181-3.b13.el7_5.i686 (centos-updates-prod)
java-devel = 1:1.8.0
也尝试了特定版本：
sudo yum install java-1.8.0-openjdk-devel-1.8.0.181-3.b13.el7_5.i686
返回： “包 1:java-1.8.0-openjdk-devel-1.8.0.181-3.b13.el7_5.i686 已被 2000:gd-jdk8-1.8.0_92-fcs 淘汰。 x86_64 已安装 无事可做。
我该如何克服这些问题？也欢迎标记建议。
[编辑]
从评论中，这是 yum repolist
Loaded plugins: changelog, fastestmirror, priorities, versionlock
Determining fastest mirrors
* epel: mirror.prgmr.com
centos-base-prod 9911/9911
centos-cpm-prod 125/125
centos-epel-prod 15503/15503
centos-extras-prod 402/402
centos-hips-prod 72/72
centos-itsec-prod 82/82
centos-pbis-prod 43/43
centos-puppet3-prod 242/242
centos-serverspec-prod 11/11
centos-updates-prod 1348/1348
centos_itsec_prod 82/82
collectd-enterprise 232/232
epel 12743/12743
gd-prod-centos-v6-64bit-scl 1121/1121
gd-prod-centos-v6-64bit-tms 163/163
gd-prod-centos-v7-64bit-base 9911/9911
gd-prod-centos-v7-64bit-epel 15503/15503
gd-prod-centos-v7-64bit-extras 402/402
gd-prod-centos-v7-64bit-hips 72/72
gd-prod-centos-v7-64bit-pan 83/83
gd-prod-centos-v7-64bit-sensu 2113/2113
gd-prod-centos-v7-64bit-updates 1348/1348
gdsnow 3/3
gutils 11/11
prod_centos_7_noarch_gd-snow 3/3
sensu-enterprise 4560/4560
yumrepos 87/87
repo id repo name status
!centos-base-prod/x86_64 centos-base-prod 9,910+1
!centos-cpm-prod/x86_64 centos-cpm-prod 125
!centos-epel-prod/x86_64 centos-epel-prod 15,503
!centos-extras-prod/x86_64 centos-extras-prod 402
!centos-hips-prod/x86_64 centos-hips-prod 72
!centos-itsec-prod/x86_64 centos-itsec-prod 82
!centos-pbis-prod/x86_64 centos-pbis-prod 43
!centos-puppet3-prod/x86_64 Centos Puppet prod Packages 242
!centos-sclo-rh/x86_64 CentOS-7 - SCLo rh 8,090
!centos-serverspec-prod/x86_64 centos-serverspec-prod 11
!centos-updates-prod/x86_64 centos-updates-prod 1,347+1
!centos_itsec_prod/x86_64 centos_itsec_prod 82
!collectd-enterprise/x86_64 Enterprise Collectd Packages 231+1
!epel/x86_64 Extra Packages for Enterprise Linux 7 - x86_64 12,743
!gd-prod-centos-v6-64bit-scl gd-prod-centos-v6-64bit-scl 1,121
!gd-prod-centos-v6-64bit-tms gd-prod-centos-v6-64bit-tms 163
!gd-prod-centos-v7-64bit-base gd-prod-centos-v7-64bit-base 9,910+1
!gd-prod-centos-v7-64bit-epel gd-prod-centos-v7-64bit-epel 15,503
!gd-prod-centos-v7-64bit-extras gd-prod-centos-v7-64bit-extras 402
!gd-prod-centos-v7-64bit-hips gd-prod-centos-v7-64bit-hips 72
!gd-prod-centos-v7-64bit-pan gd-prod-centos-v7-64bit-pan 82+1
!gd-prod-centos-v7-64bit-sensu gd-prod-centos-v7-64bit-sensu 2,113
!gd-prod-centos-v7-64bit-updates gd-prod-centos-v7-64bit-updates 1,347+1
!gdsnow prod_centos_7_noarch_gd-snow 3
!gutils/x86_64 GUtils Packages 11
!prod_centos_7_noarch_gd-snow prod_centos_7_noarch_gd-snow 3
!prod_centos_7_x86_64_saltstack prod_centos_7_x86_64_saltstack 76+26
!sensu-enterprise/x86_64 Enterprise Sensu Packages 4,560
!yumrepos Enterprise Yum Repos Repo 87
repolist: 84,336
[编辑]
根据评论仅启用 epel、base 和更新回购 yum repolist all：
之后我再次尝试 sudo yum install R
这产生了：
Error: Package: libRmath-devel-3.5.0-1.el7.x86_64 (centos-epel-prod)
Requires: libRmath = 3.5.0-1.el7
Installed: libRmath-3.5.1-1.el7.x86_64 (@epel)
libRmath = 3.5.1-1.el7
Available: libRmath-3.5.0-1.el7.x86_64 (centos-epel-prod)
libRmath = 3.5.0-1.el7
Error: Package: R-java-3.5.0-1.el7.x86_64 (centos-epel-prod)
Requires: R-core = 3.5.0-1.el7
Installed: R-core-3.5.1-1.el7.x86_64 (@epel)
R-core = 3.5.1-1.el7
Available: R-core-3.5.0-1.el7.x86_64 (centos-epel-prod)
R-core = 3.5.0-1.el7
Error: Package: 1:java-1.7.0-openjdk-1.7.0.181-2.6.14.8.el7_5.x86_64 (centos-updates-prod)
Requires: java-1.7.0-openjdk-headless = 1:1.7.0.181-2.6.14.8.el7_5
Available: 1:java-1.7.0-openjdk-headless-1.7.0.171-2.6.13.2.el7.x86_64 (centos-base-prod)
java-1.7.0-openjdk-headless = 1:1.7.0.171-2.6.13.2.el7
Available: 1:java-1.7.0-openjdk-headless-1.7.0.181-2.6.14.5.el7.x86_64 (centos-updates-prod)
java-1.7.0-openjdk-headless = 1:1.7.0.181-2.6.14.5.el7
Available: 1:java-1.7.0-openjdk-headless-1.7.0.181-2.6.14.8.el7_5.x86_64 (centos-updates-prod)
java-1.7.0-openjdk-headless = 1:1.7.0.181-2.6.14.8.el7_5
Installing: 1:java-1.7.0-openjdk-headless-1.7.0.191-2.6.15.4.el7_5.x86_64 (centos-updates-prod)
java-1.7.0-openjdk-headless = 1:1.7.0.191-2.6.15.4.el7_5
Error: Package: R-java-devel-3.5.0-1.el7.x86_64 (centos-epel-prod)
Requires: java-devel
Error: Package: R-core-devel-3.5.0-1.el7.x86_64 (centos-epel-prod)
Requires: R-core = 3.5.0-1.el7
Installed: R-core-3.5.1-1.el7.x86_64 (@epel)
R-core = 3.5.1-1.el7
Available: R-core-3.5.0-1.el7.x86_64 (centos-epel-prod)
R-core = 3.5.0-1.el7
Error: Package: 1:java-1.8.0-openjdk-1.8.0.171-7.b10.el7.x86_64 (centos-updates-prod)
Requires: java-1.8.0-openjdk-headless(x86-64) = 1:1.8.0.171-7.b10.el7
Available: 1:java-1.8.0-openjdk-headless-1.8.0.161-2.b14.el7.x86_64 (centos-base-prod)
java-1.8.0-openjdk-headless(x86-64) = 1:1.8.0.161-2.b14.el7
Available: 1:java-1.8.0-openjdk-headless-1.8.0.171-7.b10.el7.i686 (centos-updates-prod)
~java-1.8.0-openjdk-headless(x86-32) = 1:1.8.0.171-7.b10.el7
Error: Package: 1:java-1.7.0-openjdk-1.7.0.181-2.6.14.5.el7.x86_64 (centos-updates-prod)
Requires: java-1.7.0-openjdk-headless = 1:1.7.0.181-2.6.14.5.el7
Available: 1:java-1.7.0-openjdk-headless-1.7.0.171-2.6.13.2.el7.x86_64 (centos-base-prod)
java-1.7.0-openjdk-headless = 1:1.7.0.171-2.6.13.2.el7
Available: 1:java-1.7.0-openjdk-headless-1.7.0.181-2.6.14.5.el7.x86_64 (centos-updates-prod)
java-1.7.0-openjdk-headless = 1:1.7.0.181-2.6.14.5.el7
Available: 1:java-1.7.0-openjdk-headless-1.7.0.181-2.6.14.8.el7_5.x86_64 (centos-updates-prod)
java-1.7.0-openjdk-headless = 1:1.7.0.181-2.6.14.8.el7_5
Installing: 1:java-1.7.0-openjdk-headless-1.7.0.191-2.6.15.4.el7_5.x86_64 (centos-updates-prod)
java-1.7.0-openjdk-headless = 1:1.7.0.191-2.6.15.4.el7_5
Error: Package: 1:java-1.8.0-openjdk-1.8.0.171-8.b10.el7_5.x86_64 (centos-updates-prod)
Requires: java-1.8.0-openjdk-headless(x86-64) = 1:1.8.0.171-8.b10.el7_5
Available: 1:java-1.8.0-openjdk-headless-1.8.0.161-2.b14.el7.x86_64 (centos-base-prod)
java-1.8.0-openjdk-headless(x86-64) = 1:1.8.0.161-2.b14.el7
Available: 1:java-1.8.0-openjdk-headless-1.8.0.171-7.b10.el7.i686 (centos-updates-prod)
~java-1.8.0-openjdk-headless(x86-32) = 1:1.8.0.171-7.b10.el7
Available: 1:java-1.8.0-openjdk-headless-1.8.0.171-8.b10.el7_5.i686 (centos-updates-prod)
~java-1.8.0-openjdk-headless(x86-32) = 1:1.8.0.171-8.b10.el7_5
Error: Package: 1:java-1.7.0-openjdk-1.7.0.171-2.6.13.2.el7.x86_64 (centos-base-prod)
Requires: java-1.7.0-openjdk-headless = 1:1.7.0.171-2.6.13.2.el7
Available: 1:java-1.7.0-openjdk-headless-1.7.0.171-2.6.13.2.el7.x86_64 (centos-base-prod)
java-1.7.0-openjdk-headless = 1:1.7.0.171-2.6.13.2.el7
Available: 1:java-1.7.0-openjdk-headless-1.7.0.181-2.6.14.5.el7.x86_64 (centos-updates-prod)
java-1.7.0-openjdk-headless = 1:1.7.0.181-2.6.14.5.el7
Available: 1:java-1.7.0-openjdk-headless-1.7.0.181-2.6.14.8.el7_5.x86_64 (centos-updates-prod)
java-1.7.0-openjdk-headless = 1:1.7.0.181-2.6.14.8.el7_5
Installing: 1:java-1.7.0-openjdk-headless-1.7.0.191-2.6.15.4.el7_5.x86_64 (centos-updates-prod)
java-1.7.0-openjdk-headless = 1:1.7.0.191-2.6.15.4.el7_5
You could try using --skip-broken to work around the problem
You could try running: rpm -Va --nofiles --nodigest
看来您从可能 'odd' 个位置安装了有冲突的包。
1:java-1.8.0-openjdk-devel-1.8.0.181-3.b13.el7_5.i686 is obsoleted by 2000:gd-jdk8-1.8.0_92-fcs.x86_64 告诉我们 gd-jdk8 提供与 java-1.8.0-openjdk-devel 相同的东西，但 R 不喜欢那个名字，想要一个合适的 java 和 java-devel 包。
您需要做的第一件事是禁用您启用的所有这些奇怪的回购协议，只使用 epel base 和 updates 回购协议。
如果您导航到； /etc/yum.repos.d/ 您应该找到一个装满文件的文件夹。打开它们并将 enabled=1 更改为 enabled=0 这将禁用它们。
现在您应该可以 yum erase gd-jdk8 并将其与任何部门一起删除。然后你应该能够做 yum install java-devel 这应该给你正确的版本。
完成后，您将需要降级 R-core 和 libRmath 软件包，因为它出现在我们的 chat 中，您知道如何设法安装更新版本的软件包R也想要。
做； yum downgrade R-core libRmath 并向部门说 'yes'。这应该可以让您找到所需的正确版本。
最后做 yum install R，如果运气好，它应该会为您安装！
看起来很多包都是由内部仓库或其他东西提供的，因为你有很多前缀为 'gd' 的东西实际上并不像人们预期的那样 gd！我会与您的 operations/IT 团队谈谈，看看发生了什么。
最后请记住，您禁用了所有其他存储库 - 好吧，您现在可能希望重新启用它们，但是...如果您曾经做过 yum update，请务必确保您知道它将要做什么可能会尝试用那些 'gd' 前缀的包替换东西。
Yum 确实告诉您 is obsoleted 行出了什么问题。但是，当然，深入研究 deps 需要更多的知识，尤其是当您不确定自己在看什么并且它不是 'stock' 安装的 CentOS 时！