Error: Model is large in H2o autoencoder training

Question

我有一个 table 大小为 5360*51200 的。这里，5360 是实例数，51200 是特征数。我需要减少特征的维度。我在 H2o 中的堆叠自动编码器的帮助下尝试它，但它不允许我训练以引发错误：

Model is a large and large number of parameters

代码如下：

library(h2o)
h2o.init(nthreads = -1)

check.deeplearning_stacked_autoencoder <- function() {
  # this function builds a vector of autoencoder models, one per layer
  #library(h2o)
  #h2o.init()
  get_stacked_ae_array <- function(training_data, layers, args) {
    vector <- c()
    index = 0
    for (i in 1:length(layers)) {
      index = index + 1
      ae_model <- do.call(h2o.deeplearning,
                          modifyList(
                            list(
                              x = names(training_data),
                              training_frame = training_data,
                              autoencoder = T,

                              hidden = layers[i]
                            ),
                            args
                          ))
      training_data = h2o.deepfeatures(ae_model, training_data, layer =
                                         3)

      names(training_data) <-
        gsub("DF", paste0("L", index, sep = ""), names(training_data))
      vector <- c(vector, ae_model)
    }
    cat(
      length(vector))
  }

  # this function returns final encoded contents
  apply_stacked_ae_array <- function(data, ae) {
    index = 0
    for (i in 1:length(ae)) {
      index = index + 1
      data = h2o.deepfeatures(ae[[i]], data, layer = 3)
      names(data) <-
        gsub("DF", paste0("L", index, sep = ""), names(data))
    }
    data
  }

  TRAIN <-
    "E:/Chiranjibi file/Geometric features/Lu/Train/d_features.csv"
  TEST <-
    "E:/Chiranjibi file/Geometric features/Lu/Test/d_features.csv"
  response <- 51201

  # set to T for RUnit
  # set to F for stand-alone demo
  if (T) {
    train_hex <- h2o.importFile((TRAIN))
    test_hex  <- h2o.importFile((TEST))
  } else 
  {
    library(h2o)
    h2o.init()
    homedir <-
      paste0(path.expand("~"), "/h2o-dev/") #modify if needed
    train_hex <-
      h2o.importFile(path = paste0(homedir, TRAIN),
                     header = F,
                     sep = ',')
    test_hex  <-
      h2o.importFile(path = paste0(homedir, TEST),
                     header = F,
                     sep = ',')
  }
  train <- train_hex[, -response]
  test  <- test_hex [, -response]
  train_hex[, response] <- as.factor(train_hex[, response])
  test_hex [, response] <- as.factor(test_hex [, response])

  ## Build reference model on full dataset and evaluate it on the test set
  model_ref <-
    h2o.deeplearning(
      training_frame = train_hex,
      x = 1:(ncol(train_hex) - 1),
      y = response,
      hidden = c(67),
      epochs = 50
    )
  p_ref <- h2o.performance(model_ref, test_hex)
  h2o.logloss(p_ref)

  ## Now build a stacked autoencoder model with three stacked layer AE models
  ## First AE model will compress the 717 non-const predictors into 200
  ## Second AE model will compress 200 into 100
  ## Third AE model will compress 100 into 50
  layers <- c(50000,20000,10000,5000,2000, 1000, 500)
  args <- list(activation = "Tanh",
               epochs = 1,
               l1 = 1e-5)
  ae <- get_stacked_ae_array(train, layers, args)

  ## Now compress the training/testing data with this 3-stage set of AE models
  train_compressed <- apply_stacked_ae_array(train, ae)
  test_compressed <- apply_stacked_ae_array(test, ae)

  ## Build a simple model using these new features (compressed training data) and evaluate it on the compressed test set.
  train_w_resp <- h2o.cbind(train_compressed, train_hex[, response])
  test_w_resp <- h2o.cbind(test_compressed, test_hex[, response])
  model_on_compressed_data <-
    h2o.deeplearning(
      training_frame = train_w_resp,
      x = 1:(ncol(train_w_resp) - 1),
      y = ncol(train_w_resp),
      hidden = c(67),
      epochs = 1
    )
  p <- h2o.performance(model_on_compressed_data, test_w_resp)
  h2o.logloss(p)


}
#h2o.describe(train)

#doTest("Deep Learning Stacked Autoencoder", check.deeplearning_stacked_autoencoder)

Answer 1

由于您的数据集有 51,200 个特征，并且您的层数组有 50,000 个作为第一个值，因此第一组网络连接中有 51200 * 50000 == 2.56e9 个权重。

太多了，试试小一些。

Answer 2

正如汤姆所说，你的自动编码器第一层太大了。

51,200 是很多特征。它们之间有多少相关性？你拥有的相关性越多，你的自动编码器的第一层就越小。

尝试 h2o.prcomp() 并查看有多少维度覆盖了 99% 的方差，通常可以很好地指导您的第一层 can/should 有多大。

或者，如果您更喜欢更具实验性的方法：

开始于，例如一层有 200 个神经元。
看看它达到的 MSE，经过足够多的时期后停止改进。
将该层中的神经元数量加倍。
看看 MSE 是否变得更好。如果没有，就到此为止。
如果是，再次加倍，然后重复。

然后您可以尝试移动到多个图层。但是，使用比尝试单层所能获得的最好层更大的第一层没有多大意义。

Error: Model is large in H2o autoencoder training

Error: Model is large in H2o autoencoder training

h2o

dimension

reduction