如何从 MODIS 瓦片的角创建像素坐标网格?
How to create a grid of pixel coordinates from the corners of a MODIS tile?
我有一个 HDF4 文件,其 StructMetadata.0 包含以下属性:
UpperLeftPointMtrs = (-20015109.354000,1111950.519667)
LowerRightMtrs = (-18903158.834333,0.000000)
这些是 L3 网格产品(正弦投影)的 MODIS 分块的 X 和 Y 距离(以米为单位)。鉴于像素分辨率为 5km,我想 extract/create 此图块中所有像素 (240 x 240) 的坐标。我怎样才能在 Python 中做到这一点?
HDF-EOS 提供this script。在 Python 中显示如何访问和可视化 LP DAAC MCD19A2 v6 HDF-EOS2 正弦网格文件。
"""
Copyright (C) 2014-2019 The HDF Group
Copyright (C) 2014 John Evans
This example code illustrates how to access and visualize an LP DAAC MCD19A2
v6 HDF-EOS2 Sinusoidal Grid file in Python.
If you have any questions, suggestions, or comments on this example, please use
the HDF-EOS Forum (http://hdfeos.org/forums). If you would like to see an
example of any other NASA HDF/HDF-EOS data product that is not listed in the
HDF-EOS Comprehensive Examples page (http://hdfeos.org/zoo), feel free to
contact us at eoshelp@hdfgroup.org or post it at the HDF-EOS Forum
(http://hdfeos.org/forums).
Usage: save this script and run
$python MCD19A2.A2010010.h25v06.006.2018047103710.hdf.py
Tested under: Python 3.7.3 :: Anaconda custom (64-bit)
Last updated: 2019-09-20
"""
import os
import re
import pyproj
import numpy as np
import matplotlib as mpl
import matplotlib.pyplot as plt
from pyhdf.SD import SD, SDC
from mpl_toolkits.basemap import Basemap
FILE_NAME = 'MCD19A2.A2010010.h25v06.006.2018047103710.hdf'
DATAFIELD_NAME = 'Optical_Depth_055'
hdf = SD(FILE_NAME, SDC.READ)
# Read dataset.
data3D = hdf.select(DATAFIELD_NAME)
data = data3D[1,:,:].astype(np.double)
# Read attributes.
attrs = data3D.attributes(full=1)
lna=attrs["long_name"]
long_name = lna[0]
vra=attrs["valid_range"]
valid_range = vra[0]
fva=attrs["_FillValue"]
_FillValue = fva[0]
sfa=attrs["scale_factor"]
scale_factor = sfa[0]
ua=attrs["unit"]
units = ua[0]
aoa=attrs["add_offset"]
add_offset = aoa[0]
# Apply the attributes to the data.
invalid = np.logical_or(data < valid_range[0], data > valid_range[1])
invalid = np.logical_or(invalid, data == _FillValue)
data[invalid] = np.nan
data = (data - add_offset) * scale_factor
data = np.ma.masked_array(data, np.isnan(data))
# Construct the grid. The needed information is in a global attribute
# called 'StructMetadata.0'. Use regular expressions to tease out the
# extents of the grid.
fattrs = hdf.attributes(full=1)
ga = fattrs["StructMetadata.0"]
gridmeta = ga[0]
ul_regex = re.compile(r'''UpperLeftPointMtrs=\(
(?P<upper_left_x>[+-]?\d+\.\d+)
,
(?P<upper_left_y>[+-]?\d+\.\d+)
\)''', re.VERBOSE)
match = ul_regex.search(gridmeta)
x0 = np.float(match.group('upper_left_x'))
y0 = np.float(match.group('upper_left_y'))
lr_regex = re.compile(r'''LowerRightMtrs=\(
(?P<lower_right_x>[+-]?\d+\.\d+)
,
(?P<lower_right_y>[+-]?\d+\.\d+)
\)''', re.VERBOSE)
match = lr_regex.search(gridmeta)
x1 = np.float(match.group('lower_right_x'))
y1 = np.float(match.group('lower_right_y'))
nx, ny = data.shape
x = np.linspace(x0, x1, nx)
y = np.linspace(y0, y1, ny)
xv, yv = np.meshgrid(x, y)
sinu = pyproj.Proj("+proj=sinu +R=6371007.181 +nadgrids=@null +wktext")
wgs84 = pyproj.Proj("+init=EPSG:4326")
lon, lat= pyproj.transform(sinu, wgs84, xv, yv)
# There is a wrap-around issue to deal with, as some of the grid extends
# eastward over the international dateline. Adjust the longitude to avoid
# a smearing effect.
lon[lon < 0] += 360
m = Basemap(projection='cyl', resolution='l',
llcrnrlat=np.min(lat), urcrnrlat = np.max(lat),
llcrnrlon=np.min(lon), urcrnrlon = np.max(lon))
m.drawcoastlines(linewidth=0.5)
m.drawparallels(np.arange(np.floor(np.min(lat)), np.ceil(np.max(lat)), 5),
labels=[1, 0, 0, 0])
m.drawmeridians(np.arange(np.floor(np.min(lon)), np.ceil(np.max(lon)), 5),
labels=[0, 0, 0, 1])
# Subset data if you don't see any plot due to limited memory.
# m.pcolormesh(lon[::2,::2], lat[::2,::2], data[::2,::2], latlon=True)
m.pcolormesh(lon, lat, data, latlon=True)
cb = m.colorbar()
cb.set_label(units)
basename = os.path.basename(FILE_NAME)
plt.title('{0}\n{1}'.format(basename, long_name))
fig = plt.gcf()
pngfile = "{0}.py.png".format(basename)
fig.savefig(pngfile)
我有一个 HDF4 文件,其 StructMetadata.0 包含以下属性:
UpperLeftPointMtrs = (-20015109.354000,1111950.519667)
LowerRightMtrs = (-18903158.834333,0.000000)
这些是 L3 网格产品(正弦投影)的 MODIS 分块的 X 和 Y 距离(以米为单位)。鉴于像素分辨率为 5km,我想 extract/create 此图块中所有像素 (240 x 240) 的坐标。我怎样才能在 Python 中做到这一点?
HDF-EOS 提供this script。在 Python 中显示如何访问和可视化 LP DAAC MCD19A2 v6 HDF-EOS2 正弦网格文件。
"""
Copyright (C) 2014-2019 The HDF Group
Copyright (C) 2014 John Evans
This example code illustrates how to access and visualize an LP DAAC MCD19A2
v6 HDF-EOS2 Sinusoidal Grid file in Python.
If you have any questions, suggestions, or comments on this example, please use
the HDF-EOS Forum (http://hdfeos.org/forums). If you would like to see an
example of any other NASA HDF/HDF-EOS data product that is not listed in the
HDF-EOS Comprehensive Examples page (http://hdfeos.org/zoo), feel free to
contact us at eoshelp@hdfgroup.org or post it at the HDF-EOS Forum
(http://hdfeos.org/forums).
Usage: save this script and run
$python MCD19A2.A2010010.h25v06.006.2018047103710.hdf.py
Tested under: Python 3.7.3 :: Anaconda custom (64-bit)
Last updated: 2019-09-20
"""
import os
import re
import pyproj
import numpy as np
import matplotlib as mpl
import matplotlib.pyplot as plt
from pyhdf.SD import SD, SDC
from mpl_toolkits.basemap import Basemap
FILE_NAME = 'MCD19A2.A2010010.h25v06.006.2018047103710.hdf'
DATAFIELD_NAME = 'Optical_Depth_055'
hdf = SD(FILE_NAME, SDC.READ)
# Read dataset.
data3D = hdf.select(DATAFIELD_NAME)
data = data3D[1,:,:].astype(np.double)
# Read attributes.
attrs = data3D.attributes(full=1)
lna=attrs["long_name"]
long_name = lna[0]
vra=attrs["valid_range"]
valid_range = vra[0]
fva=attrs["_FillValue"]
_FillValue = fva[0]
sfa=attrs["scale_factor"]
scale_factor = sfa[0]
ua=attrs["unit"]
units = ua[0]
aoa=attrs["add_offset"]
add_offset = aoa[0]
# Apply the attributes to the data.
invalid = np.logical_or(data < valid_range[0], data > valid_range[1])
invalid = np.logical_or(invalid, data == _FillValue)
data[invalid] = np.nan
data = (data - add_offset) * scale_factor
data = np.ma.masked_array(data, np.isnan(data))
# Construct the grid. The needed information is in a global attribute
# called 'StructMetadata.0'. Use regular expressions to tease out the
# extents of the grid.
fattrs = hdf.attributes(full=1)
ga = fattrs["StructMetadata.0"]
gridmeta = ga[0]
ul_regex = re.compile(r'''UpperLeftPointMtrs=\(
(?P<upper_left_x>[+-]?\d+\.\d+)
,
(?P<upper_left_y>[+-]?\d+\.\d+)
\)''', re.VERBOSE)
match = ul_regex.search(gridmeta)
x0 = np.float(match.group('upper_left_x'))
y0 = np.float(match.group('upper_left_y'))
lr_regex = re.compile(r'''LowerRightMtrs=\(
(?P<lower_right_x>[+-]?\d+\.\d+)
,
(?P<lower_right_y>[+-]?\d+\.\d+)
\)''', re.VERBOSE)
match = lr_regex.search(gridmeta)
x1 = np.float(match.group('lower_right_x'))
y1 = np.float(match.group('lower_right_y'))
nx, ny = data.shape
x = np.linspace(x0, x1, nx)
y = np.linspace(y0, y1, ny)
xv, yv = np.meshgrid(x, y)
sinu = pyproj.Proj("+proj=sinu +R=6371007.181 +nadgrids=@null +wktext")
wgs84 = pyproj.Proj("+init=EPSG:4326")
lon, lat= pyproj.transform(sinu, wgs84, xv, yv)
# There is a wrap-around issue to deal with, as some of the grid extends
# eastward over the international dateline. Adjust the longitude to avoid
# a smearing effect.
lon[lon < 0] += 360
m = Basemap(projection='cyl', resolution='l',
llcrnrlat=np.min(lat), urcrnrlat = np.max(lat),
llcrnrlon=np.min(lon), urcrnrlon = np.max(lon))
m.drawcoastlines(linewidth=0.5)
m.drawparallels(np.arange(np.floor(np.min(lat)), np.ceil(np.max(lat)), 5),
labels=[1, 0, 0, 0])
m.drawmeridians(np.arange(np.floor(np.min(lon)), np.ceil(np.max(lon)), 5),
labels=[0, 0, 0, 1])
# Subset data if you don't see any plot due to limited memory.
# m.pcolormesh(lon[::2,::2], lat[::2,::2], data[::2,::2], latlon=True)
m.pcolormesh(lon, lat, data, latlon=True)
cb = m.colorbar()
cb.set_label(units)
basename = os.path.basename(FILE_NAME)
plt.title('{0}\n{1}'.format(basename, long_name))
fig = plt.gcf()
pngfile = "{0}.py.png".format(basename)
fig.savefig(pngfile)