Pip 安装在子包中构建轮子时失败？
Pip install fails at building wheel at subpackage?
有点像编码初学者。我一直在寻找使用 pip install 安装一个包，我在更新我的 python 之前能够获得它（目前我的 Mac 上有 Python 2.7.16 和 2.8.0）。
我要安装的包名为 CITE-seq-Count (https://hoohm.github.io/CITE-seq-Count/Installation/)
我试过他们推荐的安装方式：
pip install CITE-seq-Count==1.4.3
并且会得到这个涉及 pysam 包的错误。我试过单独安装pysam，但也有同样的错误。我看到其他人建议在 anaconda 上安装，但我不确定我是否能够在那里安装并在终端上使用。感谢您的帮助！
Building wheel for pysam (setup.py) ... error
ERROR: Command errored out with exit status 1:
command: /Library/Frameworks/Python.framework/Versions/3.8/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/gb/5mct_n_922x_zd87l3gz93xc0000gn/T/pip-install-2lxzoax8/pysam/setup.py'"'"'; __file__='"'"'/private/var/folders/gb/5mct_n_922x_zd87l3gz93xc0000gn/T/pip-install-2lxzoax8/pysam/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /private/var/folders/gb/5mct_n_922x_zd87l3gz93xc0000gn/T/pip-wheel-z6kkdnyu --python-tag cp38
cwd: /private/var/folders/gb/5mct_n_922x_zd87l3gz93xc0000gn/T/pip-install-2lxzoax8/pysam/
Complete output (277 lines):
# pysam: no cython available - using pre-compiled C
# pysam: htslib mode is shared
# pysam: HTSLIB_CONFIGURE_OPTIONS=None
# pysam: (sysconfig) CC=gcc
# pysam: (sysconfig) CFLAGS=-Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -arch x86_64 -g
# pysam: (sysconfig) LDFLAGS=-arch x86_64 -g
checking for gcc... gcc
...
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
pysam/libchtslib.c:318:82: note: expanded from macro '__Pyx_PyCode_New'
PyCode_New(a, 0, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)
~~~~~~~~~~ ^~~~
/Library/Frameworks/Python.framework/Versions/3.8/include/python3.8/code.h:122:12: note: 'PyCode_New' declared here
PyAPI_FUNC(PyCodeObject *) PyCode_New(
^
pysam/libchtslib.c:14673:255: error: too many arguments to function call, expected 15, have 16
__pyx_codeobj__7 = (PyObject*)__Pyx_PyCode_New(1, 0, 1, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__34, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_pysam_libchtslib_pyx, __pyx_n_s_call, 304, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__7)) __PYX_ERR(0, 304, __pyx_L1_error)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
pysam/libchtslib.c:318:82: note: expanded from macro '__Pyx_PyCode_New'
PyCode_New(a, 0, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)
~~~~~~~~~~ ^~~~
/Library/Frameworks/Python.framework/Versions/3.8/include/python3.8/code.h:122:12: note: 'PyCode_New' declared here
PyAPI_FUNC(PyCodeObject *) PyCode_New(
^
pysam/libchtslib.c:14685:255: error: too many arguments to function call, expected 15, have 16
__pyx_codeobj__8 = (PyObject*)__Pyx_PyCode_New(1, 0, 1, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__35, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_pysam_libchtslib_pyx, __pyx_n_s_bool, 306, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__8)) __PYX_ERR(0, 306, __pyx_L1_error)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
pysam/libchtslib.c:318:82: note: expanded from macro '__Pyx_PyCode_New'
PyCode_New(a, 0, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)
~~~~~~~~~~ ^~~~
/Library/Frameworks/Python.framework/Versions/3.8/include/python3.8/code.h:122:12: note: 'PyCode_New' declared here
PyAPI_FUNC(PyCodeObject *) PyCode_New(
^
pysam/libchtslib.c:14697:258: error: too many arguments to function call, expected 15, have 16
__pyx_codeobj__9 = (PyObject*)__Pyx_PyCode_New(1, 0, 1, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__36, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_pysam_libchtslib_pyx, __pyx_n_s_nonzero, 308, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__9)) __PYX_ERR(0, 308, __pyx_L1_error)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
pysam/libchtslib.c:318:82: note: expanded from macro '__Pyx_PyCode_New'
PyCode_New(a, 0, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)
~~~~~~~~~~ ^~~~
/Library/Frameworks/Python.framework/Versions/3.8/include/python3.8/code.h:122:12: note: 'PyCode_New' declared here
PyAPI_FUNC(PyCodeObject *) PyCode_New(
^
pysam/libchtslib.c:14709:254: error: too many arguments to function call, expected 15, have 16
__pyx_codeobj__10 = (PyObject*)__Pyx_PyCode_New(2, 0, 2, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__37, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_pysam_libchtslib_pyx, __pyx_n_s_eq, 310, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__10)) __PYX_ERR(0, 310, __pyx_L1_error)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
pysam/libchtslib.c:318:82: note: expanded from macro '__Pyx_PyCode_New'
PyCode_New(a, 0, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)
~~~~~~~~~~ ^~~~
/Library/Frameworks/Python.framework/Versions/3.8/include/python3.8/code.h:122:12: note: 'PyCode_New' declared here
PyAPI_FUNC(PyCodeObject *) PyCode_New(
^
pysam/libchtslib.c:14721:254: error: too many arguments to function call, expected 15, have 16
__pyx_codeobj__11 = (PyObject*)__Pyx_PyCode_New(2, 0, 2, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__38, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_pysam_libchtslib_pyx, __pyx_n_s_ne, 312, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__11)) __PYX_ERR(0, 312, __pyx_L1_error)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
pysam/libchtslib.c:318:82: note: expanded from macro '__Pyx_PyCode_New'
PyCode_New(a, 0, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)
~~~~~~~~~~ ^~~~
/Library/Frameworks/Python.framework/Versions/3.8/include/python3.8/code.h:122:12: note: 'PyCode_New' declared here
PyAPI_FUNC(PyCodeObject *) PyCode_New(
^
pysam/libchtslib.c:18225:9: error: too many arguments to function call, expected 15, have 16
__pyx_empty_bytes /*PyObject *lnotab*/
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
pysam/libchtslib.c:318:82: note: expanded from macro '__Pyx_PyCode_New'
PyCode_New(a, 0, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)
~~~~~~~~~~ ^~~~
/Library/Frameworks/Python.framework/Versions/3.8/include/python3.8/code.h:122:12: note: 'PyCode_New' declared here
PyAPI_FUNC(PyCodeObject *) PyCode_New(
^
7 errors generated.
error: command 'gcc' failed with exit status 1
----------------------------------------
ERROR: Command errored out with exit status 1:
这是 pysam 中的一个问题，似乎还不完全兼容 Python 3.8。这个问题已经有一个 github 问题，可能值得关注它以查看是否出现解决方案：
https://github.com/pysam-developers/pysam/issues/860
目前，如果您不依赖 3.8 功能（对我有用），回到 Python3.7 可能是最简单的解决方案。
有点像编码初学者。我一直在寻找使用 pip install 安装一个包，我在更新我的 python 之前能够获得它（目前我的 Mac 上有 Python 2.7.16 和 2.8.0）。
我要安装的包名为 CITE-seq-Count (https://hoohm.github.io/CITE-seq-Count/Installation/)
我试过他们推荐的安装方式：
pip install CITE-seq-Count==1.4.3
并且会得到这个涉及 pysam 包的错误。我试过单独安装pysam，但也有同样的错误。我看到其他人建议在 anaconda 上安装，但我不确定我是否能够在那里安装并在终端上使用。感谢您的帮助！
Building wheel for pysam (setup.py) ... error
ERROR: Command errored out with exit status 1:
command: /Library/Frameworks/Python.framework/Versions/3.8/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/gb/5mct_n_922x_zd87l3gz93xc0000gn/T/pip-install-2lxzoax8/pysam/setup.py'"'"'; __file__='"'"'/private/var/folders/gb/5mct_n_922x_zd87l3gz93xc0000gn/T/pip-install-2lxzoax8/pysam/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /private/var/folders/gb/5mct_n_922x_zd87l3gz93xc0000gn/T/pip-wheel-z6kkdnyu --python-tag cp38
cwd: /private/var/folders/gb/5mct_n_922x_zd87l3gz93xc0000gn/T/pip-install-2lxzoax8/pysam/
Complete output (277 lines):
# pysam: no cython available - using pre-compiled C
# pysam: htslib mode is shared
# pysam: HTSLIB_CONFIGURE_OPTIONS=None
# pysam: (sysconfig) CC=gcc
# pysam: (sysconfig) CFLAGS=-Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -arch x86_64 -g
# pysam: (sysconfig) LDFLAGS=-arch x86_64 -g
checking for gcc... gcc
...
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
pysam/libchtslib.c:318:82: note: expanded from macro '__Pyx_PyCode_New'
PyCode_New(a, 0, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)
~~~~~~~~~~ ^~~~
/Library/Frameworks/Python.framework/Versions/3.8/include/python3.8/code.h:122:12: note: 'PyCode_New' declared here
PyAPI_FUNC(PyCodeObject *) PyCode_New(
^
pysam/libchtslib.c:14673:255: error: too many arguments to function call, expected 15, have 16
__pyx_codeobj__7 = (PyObject*)__Pyx_PyCode_New(1, 0, 1, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__34, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_pysam_libchtslib_pyx, __pyx_n_s_call, 304, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__7)) __PYX_ERR(0, 304, __pyx_L1_error)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
pysam/libchtslib.c:318:82: note: expanded from macro '__Pyx_PyCode_New'
PyCode_New(a, 0, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)
~~~~~~~~~~ ^~~~
/Library/Frameworks/Python.framework/Versions/3.8/include/python3.8/code.h:122:12: note: 'PyCode_New' declared here
PyAPI_FUNC(PyCodeObject *) PyCode_New(
^
pysam/libchtslib.c:14685:255: error: too many arguments to function call, expected 15, have 16
__pyx_codeobj__8 = (PyObject*)__Pyx_PyCode_New(1, 0, 1, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__35, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_pysam_libchtslib_pyx, __pyx_n_s_bool, 306, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__8)) __PYX_ERR(0, 306, __pyx_L1_error)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
pysam/libchtslib.c:318:82: note: expanded from macro '__Pyx_PyCode_New'
PyCode_New(a, 0, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)
~~~~~~~~~~ ^~~~
/Library/Frameworks/Python.framework/Versions/3.8/include/python3.8/code.h:122:12: note: 'PyCode_New' declared here
PyAPI_FUNC(PyCodeObject *) PyCode_New(
^
pysam/libchtslib.c:14697:258: error: too many arguments to function call, expected 15, have 16
__pyx_codeobj__9 = (PyObject*)__Pyx_PyCode_New(1, 0, 1, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__36, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_pysam_libchtslib_pyx, __pyx_n_s_nonzero, 308, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__9)) __PYX_ERR(0, 308, __pyx_L1_error)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
pysam/libchtslib.c:318:82: note: expanded from macro '__Pyx_PyCode_New'
PyCode_New(a, 0, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)
~~~~~~~~~~ ^~~~
/Library/Frameworks/Python.framework/Versions/3.8/include/python3.8/code.h:122:12: note: 'PyCode_New' declared here
PyAPI_FUNC(PyCodeObject *) PyCode_New(
^
pysam/libchtslib.c:14709:254: error: too many arguments to function call, expected 15, have 16
__pyx_codeobj__10 = (PyObject*)__Pyx_PyCode_New(2, 0, 2, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__37, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_pysam_libchtslib_pyx, __pyx_n_s_eq, 310, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__10)) __PYX_ERR(0, 310, __pyx_L1_error)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
pysam/libchtslib.c:318:82: note: expanded from macro '__Pyx_PyCode_New'
PyCode_New(a, 0, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)
~~~~~~~~~~ ^~~~
/Library/Frameworks/Python.framework/Versions/3.8/include/python3.8/code.h:122:12: note: 'PyCode_New' declared here
PyAPI_FUNC(PyCodeObject *) PyCode_New(
^
pysam/libchtslib.c:14721:254: error: too many arguments to function call, expected 15, have 16
__pyx_codeobj__11 = (PyObject*)__Pyx_PyCode_New(2, 0, 2, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__38, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_pysam_libchtslib_pyx, __pyx_n_s_ne, 312, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__11)) __PYX_ERR(0, 312, __pyx_L1_error)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
pysam/libchtslib.c:318:82: note: expanded from macro '__Pyx_PyCode_New'
PyCode_New(a, 0, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)
~~~~~~~~~~ ^~~~
/Library/Frameworks/Python.framework/Versions/3.8/include/python3.8/code.h:122:12: note: 'PyCode_New' declared here
PyAPI_FUNC(PyCodeObject *) PyCode_New(
^
pysam/libchtslib.c:18225:9: error: too many arguments to function call, expected 15, have 16
__pyx_empty_bytes /*PyObject *lnotab*/
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
pysam/libchtslib.c:318:82: note: expanded from macro '__Pyx_PyCode_New'
PyCode_New(a, 0, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)
~~~~~~~~~~ ^~~~
/Library/Frameworks/Python.framework/Versions/3.8/include/python3.8/code.h:122:12: note: 'PyCode_New' declared here
PyAPI_FUNC(PyCodeObject *) PyCode_New(
^
7 errors generated.
error: command 'gcc' failed with exit status 1
----------------------------------------
ERROR: Command errored out with exit status 1:
这是 pysam 中的一个问题，似乎还不完全兼容 Python 3.8。这个问题已经有一个 github 问题，可能值得关注它以查看是否出现解决方案： https://github.com/pysam-developers/pysam/issues/860
目前，如果您不依赖 3.8 功能（对我有用），回到 Python3.7 可能是最简单的解决方案。