在 R studio 中安装包 "ncdf4" 失败

Question

我正在尝试安装一个名为 "ncdf4" 的 R 包。我尝试将它安装在 R-studio 界面的 "packages" 部分，但也尝试在控制台中输入 install.packages("ncdf4")。

这是我在两种情况下得到的输出：

Installing package into ‘/home/user/R/x86_64-pc-linux-gnu-library/3.6’
(as ‘lib’ is unspecified)
trying URL 'https://cloud.r-project.org/src/contrib/ncdf4_1.17.tar.gz'
Content type 'application/x-gzip' length 124458 bytes (121 KB)
==================================================
downloaded 121 KB

* installing *source* package ‘ncdf4’ ...
** package ‘ncdf4’ successfully unpacked and MD5 sums checked
** using staged installation
configure.ac: starting
checking for nc-config... no
-----------------------------------------------------------------------------------
Error, nc-config not found or not executable.  This is a script that comes with the
netcdf library, version 4.1-beta2 or later, and must be present for configuration
to succeed.

If you installed the netcdf library (and nc-config) in a standard location, nc-config
should be found automatically.  Otherwise, you can specify the full path and name of
the nc-config script by passing the --with-nc-config=/full/path/nc-config argument
flag to the configure script.  For example:

./configure --with-nc-config=/sw/dist/netcdf4/bin/nc-config

Special note for R users:
-------------------------
To pass the configure flag to R, use something like this:

R CMD INSTALL --configure-args="--with-nc-config=/home/joe/bin/nc-config" ncdf4

where you should replace /home/joe/bin etc. with the location where you have
installed the nc-config script that came with the netcdf 4 distribution.
-----------------------------------------------------------------------------------
ERROR: configuration failed for package ‘ncdf4’
* removing ‘/home/user/R/x86_64-pc-linux-gnu-library/3.6/ncdf4’
Warning in install.packages :
  installation of package ‘ncdf4’ had non-zero exit status

The downloaded source packages are in
    ‘/tmp/RtmpXcbO2y/downloaded_packages’

有人能从我提供的代码中破译出什么问题吗？谢谢

Answer 1

如果你是运行 Ubuntu18.04 或其派生版本，你可以通过以下方式查找库 netcdf4.1：

sudo apt-cache search libnetcdf

在我的会话 (Linux Mint) 中，我得到：

libnetcdf-c++4 - legacy NetCDF C++ interface
libnetcdf-c++4-1 - C++ interface for scientific data access to large binary data
libnetcdf-c++4-dbg - debugging symbols for NetCDF C++
libnetcdf-c++4-dev - creation, access, and sharing of scientific data in C++
libnetcdf-c++4-doc - NetCDF C++ API documentation
libnetcdf-cxx-legacy-dbg - debugging symbols for legacy NetCDF C++ interface
libnetcdf-cxx-legacy-dev - legacy NetCDF C++ interface - development files
libnetcdf-dev - creation, access, and sharing of scientific data
libnetcdf13 - Interface for scientific data access to large binary data
libnetcdff-dbg - debugging symbols for NetCDF Fortran
libnetcdff-dev - creation, access, and sharing of scientific data in Fortran
libnetcdff-doc - NetCDF Fortran documentation
libnetcdff6 - Fortran interface for scientific data access to large binary data

因此，安装 libnetcdf-c++4-1 应该可以解决您的问题：

sudo apt-get update
sudo apt-get install libnetcdf-c++4-1

它是否回答了您的问题？

Answer 2

我终于成功安装了 ncdf4。

我在这里读到一个类似的问题： https://r.789695.n4.nabble.com/Problem-installing-ncdf-library-td4646986.html

我在 linux 终端中安装了所有 libnetcdf 软件包，输入： sudo apt install libnetcdf-*

Answer 3

对于 Arch Linux 用户，您可能还没有安装 netcdf。您可以使用 pacman 安装 netcdf

sudo pacman -S netcdf

Answer 4

我正在使用 Ubuntu 20.4 和运行遇到同样的问题。

第 1 步：在终端中

    sudo apt-get update -y

第 2 步：在终端中

    sudo apt-get install -y libnetcdf-dev

第 3 步：在 rstudio 中

    install.packages("ncdf4")

之后ncdf4安装成功

参考： https://zoomadmin.com/HowToInstall/UbuntuPackage/libnetcdf-dev

Answer 5

只需通过 apt 安装 netcdf

apt-get install libnetcdf-dev

它对我有用（ubuntu 20.04 和 R 4）

在 R studio 中安装包 "ncdf4" 失败

Failed installation of package "ncdf4" in R studio

installation

r

package

ncdf4