包的安装具有非零退出状态
installation of package had non-zero exit status
我刚刚将 R 更新到去年 12 月 12 日发布的版本 3.6.2 "dark and stormy night"。我已经尝试安装以下软件包，但收到了同样的错误，"installation of package X had non-zero exit status"。
这些软件包包括：broom、tidyr、tidyselect、vctrs 和 rlang。
我查看了 broom 的文档，但没有看到任何内容表明它仅受某些先前版本的明确支持。对于上下文，今天下午我有 5.2.1 版本，收到类似的错误并决定升级。
有没有可能是我这边的问题，mac OSX Catalina？
我该怎么做才能解决这个问题？
根据要求，这里是错误的更多信息：
> library("tidyverse", lib.loc="/Library/Frameworks/R.framework/Versions/3.6/Resources/library")
Error: package or namespace load failed for ‘tidyverse’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
there is no package called ‘broom’
编辑 2：按照评论中的要求详尽打印所有错误和消息：
> install.packages("tidyverse")
also installing the dependencies ‘colorspace’, ‘sys’, ‘ps’, ‘highr’, ‘markdown’, ‘farver’, ‘labeling’, ‘munsell’, ‘RColorBrewer’, ‘askpass’, ‘rematch’, ‘prettyunits’, ‘processx’, ‘knitr’, ‘yaml’, ‘htmltools’, ‘evaluate’, ‘base64enc’, ‘tinytex’, ‘xfun’, ‘DBI’, ‘tidyselect’, ‘gtable’, ‘lazyeval’, ‘scales’, ‘viridisLite’, ‘withr’, ‘vctrs’, ‘curl’, ‘mime’, ‘openssl’, ‘clipr’, ‘cellranger’, ‘progress’, ‘callr’, ‘fs’, ‘rmarkdown’, ‘whisker’, ‘selectr’, ‘broom’, ‘dbplyr’, ‘forcats’, ‘ggplot2’, ‘haven’, ‘hms’, ‘httr’, ‘jsonlite’, ‘lubridate’, ‘modelr’, ‘readr’, ‘readxl’, ‘reprex’, ‘rlang’, ‘rstudioapi’, ‘rvest’, ‘tidyr’, ‘xml2’
There are binary versions available but the source versions are later:
binary source needs_compilation
prettyunits 1.1.0 1.1.1 FALSE
tidyselect 0.2.5 1.0.0 TRUE
vctrs 0.2.1 0.2.2 TRUE
callr 3.4.0 3.4.1 FALSE
broom 0.5.3 0.5.4 FALSE
rlang 0.4.2 0.4.3 TRUE
tidyr 1.0.0 1.0.2 TRUE
Do you want to install from sources the packages which need compilation? (Yes/no/cancel) yes
trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/colorspace_1.4-1.tgz'
Content type 'application/x-gzip' length 2522321 bytes (2.4 MB)
==================================================
downloaded 2.4 MB
trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/sys_3.3.tgz'
Content type 'application/x-gzip' length 47231 bytes (46 KB)
==================================================
downloaded 46 KB
trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/ps_1.3.0.tgz'
Content type 'application/x-gzip' length 209460 bytes (204 KB)
==================================================
downloaded 204 KB
trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/highr_0.8.tgz'
Content type 'application/x-gzip' length 41180 bytes (40 KB)
==================================================
downloaded 40 KB
trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/markdown_1.1.tgz'
Content type 'application/x-gzip' length 199930 bytes (195 KB)
==================================================
downloaded 195 KB
trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/farver_2.0.3.tgz'
Content type 'application/x-gzip' length 1828397 bytes (1.7 MB)
==================================================
downloaded 1.7 MB
trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/labeling_0.3.tgz'
Content type 'application/x-gzip' length 61520 bytes (60 KB)
==================================================
downloaded 60 KB
trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/munsell_0.5.0.tgz'
Content type 'application/x-gzip' length 243642 bytes (237 KB)
==================================================
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trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/RColorBrewer_1.1-2.tgz'
Content type 'application/x-gzip' length 53161 bytes (51 KB)
==================================================
downloaded 51 KB
trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/askpass_1.1.tgz'
Content type 'application/x-gzip' length 21926 bytes (21 KB)
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downloaded 21 KB
trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/rematch_1.0.1.tgz'
Content type 'application/x-gzip' length 12480 bytes (12 KB)
==================================================
downloaded 12 KB
trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/processx_3.4.1.tgz'
Content type 'application/x-gzip' length 236878 bytes (231 KB)
==================================================
downloaded 231 KB
trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/knitr_1.27.tgz'
Content type 'application/x-gzip' length 1380627 bytes (1.3 MB)
==================================================
downloaded 1.3 MB
trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/yaml_2.2.0.tgz'
Content type 'application/x-gzip' length 201073 bytes (196 KB)
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downloaded 196 KB
trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/htmltools_0.4.0.tgz'
Content type 'application/x-gzip' length 342242 bytes (334 KB)
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downloaded 334 KB
trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/evaluate_0.14.tgz'
Content type 'application/x-gzip' length 74657 bytes (72 KB)
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downloaded 72 KB
trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/base64enc_0.1-3.tgz'
Content type 'application/x-gzip' length 32230 bytes (31 KB)
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downloaded 31 KB
trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/tinytex_0.19.tgz'
Content type 'application/x-gzip' length 98971 bytes (96 KB)
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downloaded 96 KB
trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/xfun_0.12.tgz'
Content type 'application/x-gzip' length 178520 bytes (174 KB)
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downloaded 174 KB
trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/DBI_1.1.0.tgz'
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downloaded 572 KB
trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/gtable_0.3.0.tgz'
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trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/lazyeval_0.2.2.tgz'
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trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/scales_1.1.0.tgz'
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trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/viridisLite_0.3.0.tgz'
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trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/withr_2.1.2.tgz'
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trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/curl_4.3.tgz'
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trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/mime_0.8.tgz'
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trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/openssl_1.4.1.tgz'
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downloaded 2.6 MB
trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/clipr_0.7.0.tgz'
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trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/cellranger_1.1.0.tgz'
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trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/progress_1.2.2.tgz'
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trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/fs_1.3.1.tgz'
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trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/rmarkdown_2.1.tgz'
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trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/whisker_0.4.tgz'
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trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/selectr_0.4-2.tgz'
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trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/dbplyr_1.4.2.tgz'
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trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/forcats_0.4.0.tgz'
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trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/ggplot2_3.2.1.tgz'
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trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/haven_2.2.0.tgz'
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trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/hms_0.5.3.tgz'
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trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/httr_1.4.1.tgz'
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trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/jsonlite_1.6.tgz'
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trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/lubridate_1.7.4.tgz'
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trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/modelr_0.1.5.tgz'
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trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/readr_1.3.1.tgz'
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trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/readxl_1.3.1.tgz'
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trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/reprex_0.3.0.tgz'
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trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/rstudioapi_0.10.tgz'
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trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/rvest_0.3.5.tgz'
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trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/xml2_1.2.2.tgz'
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trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/tidyverse_1.3.0.tgz'
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The downloaded binary packages are in
/var/folders/rb/qs7xx8rs633bk4njyk_6t7bh0000gn/T//RtmphOGt7Z/downloaded_packages
installing the source packages ‘prettyunits’, ‘tidyselect’, ‘vctrs’, ‘callr’, ‘broom’, ‘rlang’, ‘tidyr’
trying URL 'https://cran.rstudio.com/src/contrib/prettyunits_1.1.1.tar.gz'
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trying URL 'https://cran.rstudio.com/src/contrib/tidyselect_1.0.0.tar.gz'
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trying URL 'https://cran.rstudio.com/src/contrib/broom_0.5.4.tar.gz'
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trying URL 'https://cran.rstudio.com/src/contrib/rlang_0.4.3.tar.gz'
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trying URL 'https://cran.rstudio.com/src/contrib/tidyr_1.0.2.tar.gz'
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* installing *source* package ‘prettyunits’ ...
** package ‘prettyunits’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (prettyunits)
* installing *source* package ‘callr’ ...
** package ‘callr’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (callr)
* installing *source* package ‘rlang’ ...
** package ‘rlang’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
Agreeing to the Xcode/iOS license requires admin privileges, please run “sudo xcodebuild -license” and then retry this command.
ERROR: compilation failed for package ‘rlang’
* removing ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library/rlang’
Warning in install.packages :
installation of package ‘rlang’ had non-zero exit status
ERROR: dependency ‘rlang’ is not available for package ‘vctrs’
* removing ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library/vctrs’
Warning in install.packages :
installation of package ‘vctrs’ had non-zero exit status
ERROR: dependencies ‘rlang’, ‘vctrs’ are not available for package ‘tidyselect’
* removing ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library/tidyselect’
Warning in install.packages :
installation of package ‘tidyselect’ had non-zero exit status
ERROR: dependencies ‘rlang’, ‘tidyselect’, ‘vctrs’ are not available for package ‘tidyr’
* removing ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library/tidyr’
Warning in install.packages :
installation of package ‘tidyr’ had non-zero exit status
ERROR: dependency ‘tidyr’ is not available for package ‘broom’
* removing ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library/broom’
Warning in install.packages :
installation of package ‘broom’ had non-zero exit status
The downloaded source packages are in
‘/private/var/folders/rb/qs7xx8rs633bk4njyk_6t7bh0000gn/T/RtmphOGt7Z/downloaded_packages’
当您调用 install.packages("broom")（或插入包）时，您收到的消息似乎是：
Do you want to install from sources the packages which need compilation? (Yes/no/cancel) 您已回答 yes.
尝试no并比较结果。这应该可以解决问题。
我刚刚将 R 更新到去年 12 月 12 日发布的版本 3.6.2 "dark and stormy night"。我已经尝试安装以下软件包，但收到了同样的错误，"installation of package X had non-zero exit status"。
这些软件包包括：broom、tidyr、tidyselect、vctrs 和 rlang。
我查看了 broom 的文档，但没有看到任何内容表明它仅受某些先前版本的明确支持。对于上下文，今天下午我有 5.2.1 版本，收到类似的错误并决定升级。
有没有可能是我这边的问题，mac OSX Catalina？ 我该怎么做才能解决这个问题？
根据要求，这里是错误的更多信息：
> library("tidyverse", lib.loc="/Library/Frameworks/R.framework/Versions/3.6/Resources/library")
Error: package or namespace load failed for ‘tidyverse’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
there is no package called ‘broom’
编辑 2：按照评论中的要求详尽打印所有错误和消息：
> install.packages("tidyverse")
also installing the dependencies ‘colorspace’, ‘sys’, ‘ps’, ‘highr’, ‘markdown’, ‘farver’, ‘labeling’, ‘munsell’, ‘RColorBrewer’, ‘askpass’, ‘rematch’, ‘prettyunits’, ‘processx’, ‘knitr’, ‘yaml’, ‘htmltools’, ‘evaluate’, ‘base64enc’, ‘tinytex’, ‘xfun’, ‘DBI’, ‘tidyselect’, ‘gtable’, ‘lazyeval’, ‘scales’, ‘viridisLite’, ‘withr’, ‘vctrs’, ‘curl’, ‘mime’, ‘openssl’, ‘clipr’, ‘cellranger’, ‘progress’, ‘callr’, ‘fs’, ‘rmarkdown’, ‘whisker’, ‘selectr’, ‘broom’, ‘dbplyr’, ‘forcats’, ‘ggplot2’, ‘haven’, ‘hms’, ‘httr’, ‘jsonlite’, ‘lubridate’, ‘modelr’, ‘readr’, ‘readxl’, ‘reprex’, ‘rlang’, ‘rstudioapi’, ‘rvest’, ‘tidyr’, ‘xml2’
There are binary versions available but the source versions are later:
binary source needs_compilation
prettyunits 1.1.0 1.1.1 FALSE
tidyselect 0.2.5 1.0.0 TRUE
vctrs 0.2.1 0.2.2 TRUE
callr 3.4.0 3.4.1 FALSE
broom 0.5.3 0.5.4 FALSE
rlang 0.4.2 0.4.3 TRUE
tidyr 1.0.0 1.0.2 TRUE
Do you want to install from sources the packages which need compilation? (Yes/no/cancel) yes
trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/colorspace_1.4-1.tgz'
Content type 'application/x-gzip' length 2522321 bytes (2.4 MB)
==================================================
downloaded 2.4 MB
trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/sys_3.3.tgz'
Content type 'application/x-gzip' length 47231 bytes (46 KB)
==================================================
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trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/ps_1.3.0.tgz'
Content type 'application/x-gzip' length 209460 bytes (204 KB)
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trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/highr_0.8.tgz'
Content type 'application/x-gzip' length 41180 bytes (40 KB)
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trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/markdown_1.1.tgz'
Content type 'application/x-gzip' length 199930 bytes (195 KB)
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trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/farver_2.0.3.tgz'
Content type 'application/x-gzip' length 1828397 bytes (1.7 MB)
==================================================
downloaded 1.7 MB
trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/labeling_0.3.tgz'
Content type 'application/x-gzip' length 61520 bytes (60 KB)
==================================================
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trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/munsell_0.5.0.tgz'
Content type 'application/x-gzip' length 243642 bytes (237 KB)
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trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/RColorBrewer_1.1-2.tgz'
Content type 'application/x-gzip' length 53161 bytes (51 KB)
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trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/askpass_1.1.tgz'
Content type 'application/x-gzip' length 21926 bytes (21 KB)
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trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/rematch_1.0.1.tgz'
Content type 'application/x-gzip' length 12480 bytes (12 KB)
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trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/processx_3.4.1.tgz'
Content type 'application/x-gzip' length 236878 bytes (231 KB)
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trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/knitr_1.27.tgz'
Content type 'application/x-gzip' length 1380627 bytes (1.3 MB)
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trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/yaml_2.2.0.tgz'
Content type 'application/x-gzip' length 201073 bytes (196 KB)
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trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/htmltools_0.4.0.tgz'
Content type 'application/x-gzip' length 342242 bytes (334 KB)
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trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/evaluate_0.14.tgz'
Content type 'application/x-gzip' length 74657 bytes (72 KB)
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trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/base64enc_0.1-3.tgz'
Content type 'application/x-gzip' length 32230 bytes (31 KB)
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trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/xfun_0.12.tgz'
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trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/DBI_1.1.0.tgz'
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trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/scales_1.1.0.tgz'
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trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/viridisLite_0.3.0.tgz'
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trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/curl_4.3.tgz'
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trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/selectr_0.4-2.tgz'
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The downloaded binary packages are in
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installing the source packages ‘prettyunits’, ‘tidyselect’, ‘vctrs’, ‘callr’, ‘broom’, ‘rlang’, ‘tidyr’
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* installing *source* package ‘prettyunits’ ...
** package ‘prettyunits’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (prettyunits)
* installing *source* package ‘callr’ ...
** package ‘callr’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (callr)
* installing *source* package ‘rlang’ ...
** package ‘rlang’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
Agreeing to the Xcode/iOS license requires admin privileges, please run “sudo xcodebuild -license” and then retry this command.
ERROR: compilation failed for package ‘rlang’
* removing ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library/rlang’
Warning in install.packages :
installation of package ‘rlang’ had non-zero exit status
ERROR: dependency ‘rlang’ is not available for package ‘vctrs’
* removing ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library/vctrs’
Warning in install.packages :
installation of package ‘vctrs’ had non-zero exit status
ERROR: dependencies ‘rlang’, ‘vctrs’ are not available for package ‘tidyselect’
* removing ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library/tidyselect’
Warning in install.packages :
installation of package ‘tidyselect’ had non-zero exit status
ERROR: dependencies ‘rlang’, ‘tidyselect’, ‘vctrs’ are not available for package ‘tidyr’
* removing ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library/tidyr’
Warning in install.packages :
installation of package ‘tidyr’ had non-zero exit status
ERROR: dependency ‘tidyr’ is not available for package ‘broom’
* removing ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library/broom’
Warning in install.packages :
installation of package ‘broom’ had non-zero exit status
The downloaded source packages are in
‘/private/var/folders/rb/qs7xx8rs633bk4njyk_6t7bh0000gn/T/RtmphOGt7Z/downloaded_packages’
当您调用 install.packages("broom")（或插入包）时，您收到的消息似乎是：
Do you want to install from sources the packages which need compilation? (Yes/no/cancel) 您已回答 yes.
尝试no并比较结果。这应该可以解决问题。