如何从 dicom 文件中读取二进制数据？

Question

如何从未压缩的 DICOM 文件中读取原始图像数据并将其转储到文件中。我只是将以下代码用于压缩文件。使用 dcmtk 库

dataSet->findAndGetElement(DCM_PixelData, element);
pixDataElem = OFstatic_cast(DcmPixelData*, element);

DcmPixelSequence *pixelSequence = NULL;
E_TransferSyntax tran_Syntax = EXS_Unknown;
const DcmRepresentationParameter *representation = NULL;

// Find the key that is needed to access the right representation of the data within DCMTK
pixDataElem->getOriginalRepresentationKey(tran_Syntax, representation);
//pixDataElem->getCurrentRepresentationKey(tran_Syntax, representation);

// Access original data representation and get result within pixel sequence
pixDataElem->getEncapsulatedRepresentation(tran_Syntax, representation, pixelSequence);


    DcmPixelItem *pixelItem = NULL;
    //Access the First frame by skipping the offset table...
    pixelSequence->getItem(pixelItem, 1);

    Uint8 *pixels = NULL;
    pixDataElem = (DcmPixelData*)pixelItem;
    pixDataElem->getUint8Array(pixels);
    Uint8 *pixels = NULL;
    pixDataElem->getUint8Array(pixels);
    //Writing the Raw data to a file...
    FILE *file;
    file = fopen("D:\DicomImage.jpeg", "wb");
    fwrite(pixels, sizeof(char), imageSize, file);
    cout << "File write Completed and the File is closed Successfully" << endl;

如何使用 dcmtk 库在 c++ 中从具有许多帧的未压缩文件中获取原始图像数据......？

Answer 1

基本上，您可以使用相同的代码，但不进行压缩（这实际上是更简单的情况...）

dataSet->findAndGetElement(DCM_PixelData, element);
pixDataElem = OFstatic_cast(DcmPixelData*, element);

Uint8 *pixels = NULL;
pixDataElem->getUint8Array(pixels);

//Writing the Raw data to a file...
FILE *file;
file = fopen("D:\DicomImage.raw", "wb");
// frameSize is the size of a single frame
fwrite(pixels + frameSize * frameIndex, sizeof(char), frameSize, file);
cout << "File write Completed and the File is closed Successfully" << endl;

（这是我的想法，所以不能保证完整性）
你得到的是原始二进制数据。如果你想从中创建一个像 JPG 这样的图像文件，你需要相应的图像功能，尽管这与 dcmtk 无关。

Answer 2

如果你知道图像没有被压缩，那么你可以用这种方式访问第一帧的原始数据 Imebra:

imebra::DataSet loadedDataSet = imebra::CodecFactory::Load("pathToFileName);

size_t imageWidth = loadedDataSet.getUint32(imebra::TagId(imebra::tagId_t::Columns_0028_0011), 0);
size_t imageHeight = loadedDataSet.getUint32(imebra::TagId(imebra::tagId_t::Rows_0028_0010), 0);
size_t channels = loadedDataSet.getUint32(imebra::TagId(imebra::tagId_t::SamplesPerPixel_0028_0002), 0);
size_t allocatedBits = loadedDataSet.getUint32(imebra::TagId(imebra::tagId_t::BitsAllocated_0028_0100), 0);
size_t totalSizeBytes = (imageWidth * imageHeight * allocatedBits * channels + 7) / 8;

ReadingDataHandlerNumeric rawData = loadedDataSet.getReadingDataHandlerNumeric(TagId(PixelData_7FE0_0010), 0);

size_t dataSize(0);
const char* pMemory = rawData.data(&dataSize);
// Now pMemory points to the raw data, dataSize holds the memory size

如果您需要第二帧或者图像被压缩，那么您应该使用 imebra::DataSet::getImage() 并让 imebra 找到合适的内存区域并为您解压缩图像。

请注意，连续的未压缩图像未按字节边界对齐，但第二帧的第一位可能与包含第一帧最后一位的字节相同。对于压缩图像，您可能必须处理指向包含图像的缓冲区的偏移量 table。

免责声明：我是 Imebra 的作者。

如何从 dicom 文件中读取二进制数据？

How to read binary data from dicom file?

c++

dicom

dcmtk