安装 petcs 时出现错误。如何解决？
There has been an error in the installation of petcs. How to solve it?
电脑配置：我的电脑是maosx系统，在虚拟机里安装了ubuntu，原来的系统安装了梯子（VPN），Linux没有安装成功梯子（VPN）。
环境配置：在虚拟机中安装petsc，下载并解压petsc软件包，安装GCC，gfortran，之前分别下载了MPI和BLAS/LAPACK，但是安装MPI时出现错误。 .
./configure --with-cc=gcc --with-cxx=g++ --with-fc=gfortran --download-mpich --download-fblaslapack
命令行执行，结果提示无法从官网下载MPI（我试过下载url，安装梯子（VPN）后可以下载。下面是输入命令和结果：
<pre><font color="#8AE234"><b>parallels@parallels-Parallels-Virtual-Platform</b></font>:<font color="#729FCF"><b>~/petsc-3.13.0</b></font>$ ./configure --with-cc=gcc --with-cxx=g++ --with-fc=gfortran --download-mpich --download-fblaslapack
===============================================================================
Configuring PETSc to compile on your system
===============================================================================
=============================================================================== Trying to download https://www.mpich.org/static/downloads/3.3.2/mpich-3.3.=============================================================================== =============================================================================== Trying to download http://ftp.mcs.anl.gov/pub/petsc/externalpackages/mpich=============================================================================== =============================================================================== Trying to download ftp://ftp.mcs.anl.gov/pub/petsc/externalpackages/mpich-=============================================================================== =============================================================================== Trying to download https://www.mcs.anl.gov/petsc/mirror/externalpackages/m=============================================================================== *******************************************************************************
UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details):
-------------------------------------------------------------------------------
Error during download/extract/detection of MPICH:
Unable to download package MPICH from: https://www.mpich.org/static/downloads/3.3.2/mpich-3.3.2.tar.gz
* If URL specified manually - perhaps there is a typo?
* If your network is disconnected - please reconnect and rerun ./configure
* Or perhaps you have a firewall blocking the download
* You can run with --with-packages-download-dir=/adirectory and ./configure will instruct you what packages to download manually
* or you can download the above URL manually, to /yourselectedlocation/mpich-3.3.2.tar.gz
and use the configure option:
--download-mpich=/yourselectedlocation/mpich-3.3.2.tar.gz
Unable to download package MPICH from: http://ftp.mcs.anl.gov/pub/petsc/externalpackages/mpich-3.3.2.tar.gz
* If URL specified manually - perhaps there is a typo?
* If your network is disconnected - please reconnect and rerun ./configure
* Or perhaps you have a firewall blocking the download
* You can run with --with-packages-download-dir=/adirectory and ./configure will instruct you what packages to download manually
* or you can download the above URL manually, to /yourselectedlocation/mpich-3.3.2.tar.gz
and use the configure option:
--download-mpich=/yourselectedlocation/mpich-3.3.2.tar.gz
Unable to download package MPICH from: ftp://ftp.mcs.anl.gov/pub/petsc/externalpackages/mpich-3.3.2.tar.gz
* If URL specified manually - perhaps there is a typo?
* If your network is disconnected - please reconnect and rerun ./configure
* Or perhaps you have a firewall blocking the download
* You can run with --with-packages-download-dir=/adirectory and ./configure will instruct you what packages to download manually
* or you can download the above URL manually, to /yourselectedlocation/mpich-3.3.2.tar.gz
and use the configure option:
--download-mpich=/yourselectedlocation/mpich-3.3.2.tar.gz
Unable to download package MPICH from: https://www.mcs.anl.gov/petsc/mirror/externalpackages/mpich-3.3.2.tar.gz
* If URL specified manually - perhaps there is a typo?
* If your network is disconnected - please reconnect and rerun ./configure
* Or perhaps you have a firewall blocking the download
* You can run with --with-packages-download-dir=/adirectory and ./configure will instruct you what packages to download manually
* or you can download the above URL manually, to /yourselectedlocation/mpich-3.3.2.tar.gz
and use the configure option:
--download-mpich=/yourselectedlocation/mpich-3.3.2.tar.gz
*******************************************************************************
</pre>
按照提示：提前下载mpich包。我知道mpich包的存放位置，但是结果显示我的下载位置无效。是我选错地方了吗？下面是我第二次输入命令和结果，请大家帮我看看哪里有问题。
<pre><font color="#8AE234"><b>parallels@parallels-Parallels-Virtual-Platform</b></font>:<font color="#729FCF"><b>~/DummyFolder/PETSC</b></font>$ ./configure --with-cc=gcc --with-cxx=g++ --with-fc=gfortran --download-mpich=/Downloads/mpich-3.3.2.tar.gz --download-fblaslapack
===============================================================================
Configuring PETSc to compile on your system
===============================================================================
*******************************************************************************
ERROR in COMMAND LINE ARGUMENT to ./configure
-------------------------------------------------------------------------------
Invalid download location: /Downloads/mpich-3.3.2.tar.gz for key download-mpich
*******************************************************************************
File "./config/configure.py", line 390, in petsc_configure
framework = config.framework.Framework(['--configModules=PETSc.Configure','--optionsModule=config.compilerOptions']+sys.argv[1:], loadArgDB = 0)
File "/home/parallels/DummyFolder/PETSC/config/BuildSystem/config/framework.py", line 110, in __init__
self.createChildren()
File "/home/parallels/DummyFolder/PETSC/config/BuildSystem/config/framework.py", line 321, in createChildren
self.getChild(moduleName)
File "/home/parallels/DummyFolder/PETSC/config/BuildSystem/config/framework.py", line 306, in getChild
config.setupDependencies(self)
File "/home/parallels/DummyFolder/PETSC/config/PETSc/Configure.py", line 95, in setupDependencies
self.blasLapack = framework.require('config.packages.BlasLapack',self)
File "/home/parallels/DummyFolder/PETSC/config/BuildSystem/config/framework.py", line 326, in require
config = self.getChild(moduleName, keywordArgs)
File "/home/parallels/DummyFolder/PETSC/config/BuildSystem/config/framework.py", line 306, in getChild
config.setupDependencies(self)
File "/home/parallels/DummyFolder/PETSC/config/BuildSystem/config/packages/BlasLapack.py", line 22, in setupDependencies
config.package.Package.setupDependencies(self, framework)
File "/home/parallels/DummyFolder/PETSC/config/BuildSystem/config/package.py", line 119, in setupDependencies
self.mpi = framework.require('config.packages.MPI',self)
File "/home/parallels/DummyFolder/PETSC/config/BuildSystem/config/framework.py", line 326, in require
config = self.getChild(moduleName, keywordArgs)
File "/home/parallels/DummyFolder/PETSC/config/BuildSystem/config/framework.py", line 306, in getChild
config.setupDependencies(self)
File "/home/parallels/DummyFolder/PETSC/config/BuildSystem/config/packages/MPI.py", line 62, in setupDependencies
self.mpich = framework.require('config.packages.MPICH', self)
File "/home/parallels/DummyFolder/PETSC/config/BuildSystem/config/framework.py", line 326, in require
config = self.getChild(moduleName, keywordArgs)
File "/home/parallels/DummyFolder/PETSC/config/BuildSystem/config/framework.py", line 304, in getChild
config.setup()
File "/home/parallels/DummyFolder/PETSC/config/BuildSystem/script.py", line 101, in setup
logger.Logger.setup(self)
File "/home/parallels/DummyFolder/PETSC/config/BuildSystem/logger.py", line 85, in setup
args.ArgumentProcessor.setup(self)
File "/home/parallels/DummyFolder/PETSC/config/BuildSystem/args.py", line 75, in setup
self.setupArguments(self.argDB)
File "/home/parallels/DummyFolder/PETSC/config/BuildSystem/script.py", line 85, in setupArguments
self.setupHelp(self.help)
File "/home/parallels/DummyFolder/PETSC/config/BuildSystem/config/packages/MPICH.py", line 24, in setupHelp
config.package.GNUPackage.setupHelp(self,help)
File "/home/parallels/DummyFolder/PETSC/config/BuildSystem/config/package.py", line 1224, in setupHelp
config.package.Package.setupHelp(self,help)
File "/home/parallels/DummyFolder/PETSC/config/BuildSystem/config/package.py", line 132, in setupHelp
help.addArgument(self.PACKAGE, '-download-'+self.package+'=<no,yes,filename,url>', nargs.ArgDownload(None, 0, 'Download and install '+self.name))
File "/home/parallels/DummyFolder/PETSC/config/BuildSystem/help.py", line 107, in addArgument
self.argDB.setType(self.getArgName(name), argType, forceLocal = 1)
File "/home/parallels/DummyFolder/PETSC/config/BuildSystem/RDict.py", line 213, in setType
value.setValue(v.getValue())
File "/home/parallels/DummyFolder/PETSC/config/BuildSystem/nargs.py", line 500, in setValue
raise ValueError('Invalid download location: '+str(value)+' for key '+str(self.key))
<font color="#8AE234"><b>parallels@parallels-Parallels-Virtual-Platform</b></font>:<font color="#729FCF"><b>~/DummyFolder/PETSC</b></font>$
</pre>
相反，我直接进入配置命令行。/configure stage complete.now build PETSc libraries with
<pre><font color="#8AE234"><b>parallels@parallels-Parallels-Virtual-Platform</b></font>:<font color="#729FCF"><b>~/DummyFolder/PETSC</b></font>$ ./configure
===============================================================================
Configuring PETSc to compile on your system
===============================================================================
Compilers:
C Compiler: mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3
C++ Compiler: mpicxx -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -fPIC
Fortran Compiler: mpif90 -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g
Linkers:
Shared linker: mpicc -shared -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3
Dynamic linker: mpicc -shared -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3
make:
BLAS/LAPACK: -llapack -lblas
MPI:
cmake:
Arch:
valgrind:
pthread:
PETSc:
PETSC_ARCH: arch-linux2-c-debug
PETSC_DIR: /home/parallels/DummyFolder/PETSC
Scalar type: real
Precision: double
Clanguage: C
Integer size: 32
shared libraries: enabled
Memory alignment: 16
xxx=========================================================================xxx
Configure stage complete. Now build PETSc libraries with (gnumake build):
make PETSC_DIR=/home/parallels/DummyFolder/PETSC PETSC_ARCH=arch-linux2-c-debug all
xxx=========================================================================xxx
<font color="#8AE234"><b>parallels@parallels-Parallels-Virtual-Platform</b></font>:<font color="#729FCF"><b>~/DummyFolder/PETSC</b></font>$ make PETSC_DIR=/home/parallels/DummyFolder/PETSC PETSC_ARCH=arch-linux2-c-debug all
+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
The version of PETSc you are using is out-of-date, we recommend updating to the new release
Available Version: 3.12.4 Installed Version: 3.8.3
http://www.mcs.anl.gov/petsc/download/index.html
+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
make[1]: 进入目录“/home/parallels/DummyFolder/PETSC”
==========================================
See documentation/faq.html and documentation/bugreporting.html
for help with installation problems. Please send EVERYTHING
printed out below when reporting problems. Please check the
mailing list archives and consider subscribing.
http://www.mcs.anl.gov/petsc/miscellaneous/mailing-lists.html
==========================================
Starting on parallels-Parallels-Virtual-Platform at Thu Apr 16 10:33:08 CST 2020
Machine characteristics: Linux parallels-Parallels-Virtual-Platform 4.15.0-34-generic #37-Ubuntu SMP Mon Aug 27 15:21:48 UTC 2018 x86_64 x86_64 x86_64 GNU/Linux
-----------------------------------------
Using PETSc directory: /home/parallels/DummyFolder/PETSC
Using PETSc arch: arch-linux2-c-debug
-----------------------------------------
PETSC_VERSION_RELEASE 1
PETSC_VERSION_MAJOR 3
PETSC_VERSION_MINOR 8
PETSC_VERSION_SUBMINOR 3
</pre>
……
……
……
<pre> FC arch-linux2-c-debug/obj/src/ksp/f90-mod/petsckspmod.o
FC arch-linux2-c-debug/obj/src/snes/f90-mod/petscsnesmod.o
FC arch-linux2-c-debug/obj/src/ts/f90-mod/petsctsmod.o
FC arch-linux2-c-debug/obj/src/tao/f90-mod/petsctaomod.o
CLINKER /home/parallels/DummyFolder/PETSC/arch-linux2-c-debug/lib/libpetsc.so.3.8.3
make[2]: 离开目录“/home/parallels/DummyFolder/PETSC”
=========================================
make[1]: 离开目录“/home/parallels/DummyFolder/PETSC”
Now to check if the libraries are working do:
make PETSC_DIR=/home/parallels/DummyFolder/PETSC PETSC_ARCH=arch-linux2-c-debug test
=========================================
<font color="#8AE234"><b>parallels@parallels-Parallels-Virtual-Platform</b></font>:<font color="#729FCF"><b>~/DummyFolder/PETSC</b></font>$ ^C
<font color="#8AE234"><b>parallels@parallels-Parallels-Virtual-Platform</b></font>:<font color="#729FCF"><b>~/DummyFolder/PETSC</b></font>$ make PETSC_DIR=/home/parallels/DummyFolder/PETSC PETSC_ARCH=arch-linux2-c-debug test
Running test examples to verify correct installation
Using PETSC_DIR=/home/parallels/DummyFolder/PETSC and PETSC_ARCH=arch-linux2-c-debug
C/C++ example src/snes/examples/tutorials/ex19 run successfully with 1 MPI process
C/C++ example src/snes/examples/tutorials/ex19 run successfully with 2 MPI processes
Fortran example src/snes/examples/tutorials/ex5f run successfully with 1 MPI process
Completed test examples
=========================================
Now to evaluate the computer systems you plan use - do:
make PETSC_DIR=/home/parallels/DummyFolder/PETSC PETSC_ARCH=arch-linux2-c-debug streams
<font color="#8AE234"><b>parallels@parallels-Parallels-Virtual-Platform</b></font>:<font color="#729FCF"><b>~/DummyFolder/PETSC</b></font>$ make PETSC_DIR=/home/parallels/DummyFolder/PETSC PETSC_ARCH=arch-linux2-c-debug streams
cd src/benchmarks/streams; /usr/bin/make --no-print-directory PETSC_DIR=/home/parallels/DummyFolder/PETSC PETSC_ARCH=arch-linux2-c-debug streams
mpicc -o MPIVersion.o -c -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 -I/home/parallels/DummyFolder/PETSC/include -I/home/parallels/DummyFolder/PETSC/arch-linux2-c-debug/include `pwd`/MPIVersion.c
Running streams with 'mpiexec ' using 'NPMAX=2'
Number of MPI processes 1 Processor names parallels-Parallels-Virtual-Platform
Triad: 15990.2886 Rate (MB/s)
Number of MPI processes 2 Processor names parallels-Parallels-Virtual-Platform parallels-Parallels-Virtual-Platform
Triad: 31023.1764 Rate (MB/s)
------------------------------------------------
np speedup
1 1.0
2 1.94
Estimation of possible speedup of MPI programs based on Streams benchmark.
It appears you have 1 node(s)
<font color="#8AE234"><b>parallels@parallels-Parallels-Virtual-Pla</b></font></pre>
我尝试将 GCC 升级到最新版本，但没有任何变化
正如 Satish 在电子邮件中所说，您的机器可能 运行 内存不足。 gfort运行 在编译时可以占用更多的 2GB 内存。如果您不需要 Fort运行，另一种方法是使用 --with-fc=0.
进行配置
电脑配置：我的电脑是maosx系统，在虚拟机里安装了ubuntu，原来的系统安装了梯子（VPN），Linux没有安装成功梯子（VPN）。
环境配置：在虚拟机中安装petsc，下载并解压petsc软件包，安装GCC，gfortran，之前分别下载了MPI和BLAS/LAPACK，但是安装MPI时出现错误。 .
./configure --with-cc=gcc --with-cxx=g++ --with-fc=gfortran --download-mpich --download-fblaslapack
命令行执行，结果提示无法从官网下载MPI（我试过下载url，安装梯子（VPN）后可以下载。下面是输入命令和结果：
<pre><font color="#8AE234"><b>parallels@parallels-Parallels-Virtual-Platform</b></font>:<font color="#729FCF"><b>~/petsc-3.13.0</b></font>$ ./configure --with-cc=gcc --with-cxx=g++ --with-fc=gfortran --download-mpich --download-fblaslapack
===============================================================================
Configuring PETSc to compile on your system
===============================================================================
=============================================================================== Trying to download https://www.mpich.org/static/downloads/3.3.2/mpich-3.3.=============================================================================== =============================================================================== Trying to download http://ftp.mcs.anl.gov/pub/petsc/externalpackages/mpich=============================================================================== =============================================================================== Trying to download ftp://ftp.mcs.anl.gov/pub/petsc/externalpackages/mpich-=============================================================================== =============================================================================== Trying to download https://www.mcs.anl.gov/petsc/mirror/externalpackages/m=============================================================================== *******************************************************************************
UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details):
-------------------------------------------------------------------------------
Error during download/extract/detection of MPICH:
Unable to download package MPICH from: https://www.mpich.org/static/downloads/3.3.2/mpich-3.3.2.tar.gz
* If URL specified manually - perhaps there is a typo?
* If your network is disconnected - please reconnect and rerun ./configure
* Or perhaps you have a firewall blocking the download
* You can run with --with-packages-download-dir=/adirectory and ./configure will instruct you what packages to download manually
* or you can download the above URL manually, to /yourselectedlocation/mpich-3.3.2.tar.gz
and use the configure option:
--download-mpich=/yourselectedlocation/mpich-3.3.2.tar.gz
Unable to download package MPICH from: http://ftp.mcs.anl.gov/pub/petsc/externalpackages/mpich-3.3.2.tar.gz
* If URL specified manually - perhaps there is a typo?
* If your network is disconnected - please reconnect and rerun ./configure
* Or perhaps you have a firewall blocking the download
* You can run with --with-packages-download-dir=/adirectory and ./configure will instruct you what packages to download manually
* or you can download the above URL manually, to /yourselectedlocation/mpich-3.3.2.tar.gz
and use the configure option:
--download-mpich=/yourselectedlocation/mpich-3.3.2.tar.gz
Unable to download package MPICH from: ftp://ftp.mcs.anl.gov/pub/petsc/externalpackages/mpich-3.3.2.tar.gz
* If URL specified manually - perhaps there is a typo?
* If your network is disconnected - please reconnect and rerun ./configure
* Or perhaps you have a firewall blocking the download
* You can run with --with-packages-download-dir=/adirectory and ./configure will instruct you what packages to download manually
* or you can download the above URL manually, to /yourselectedlocation/mpich-3.3.2.tar.gz
and use the configure option:
--download-mpich=/yourselectedlocation/mpich-3.3.2.tar.gz
Unable to download package MPICH from: https://www.mcs.anl.gov/petsc/mirror/externalpackages/mpich-3.3.2.tar.gz
* If URL specified manually - perhaps there is a typo?
* If your network is disconnected - please reconnect and rerun ./configure
* Or perhaps you have a firewall blocking the download
* You can run with --with-packages-download-dir=/adirectory and ./configure will instruct you what packages to download manually
* or you can download the above URL manually, to /yourselectedlocation/mpich-3.3.2.tar.gz
and use the configure option:
--download-mpich=/yourselectedlocation/mpich-3.3.2.tar.gz
*******************************************************************************
</pre>
按照提示：提前下载mpich包。我知道mpich包的存放位置，但是结果显示我的下载位置无效。是我选错地方了吗？下面是我第二次输入命令和结果，请大家帮我看看哪里有问题。
<pre><font color="#8AE234"><b>parallels@parallels-Parallels-Virtual-Platform</b></font>:<font color="#729FCF"><b>~/DummyFolder/PETSC</b></font>$ ./configure --with-cc=gcc --with-cxx=g++ --with-fc=gfortran --download-mpich=/Downloads/mpich-3.3.2.tar.gz --download-fblaslapack
===============================================================================
Configuring PETSc to compile on your system
===============================================================================
*******************************************************************************
ERROR in COMMAND LINE ARGUMENT to ./configure
-------------------------------------------------------------------------------
Invalid download location: /Downloads/mpich-3.3.2.tar.gz for key download-mpich
*******************************************************************************
File "./config/configure.py", line 390, in petsc_configure
framework = config.framework.Framework(['--configModules=PETSc.Configure','--optionsModule=config.compilerOptions']+sys.argv[1:], loadArgDB = 0)
File "/home/parallels/DummyFolder/PETSC/config/BuildSystem/config/framework.py", line 110, in __init__
self.createChildren()
File "/home/parallels/DummyFolder/PETSC/config/BuildSystem/config/framework.py", line 321, in createChildren
self.getChild(moduleName)
File "/home/parallels/DummyFolder/PETSC/config/BuildSystem/config/framework.py", line 306, in getChild
config.setupDependencies(self)
File "/home/parallels/DummyFolder/PETSC/config/PETSc/Configure.py", line 95, in setupDependencies
self.blasLapack = framework.require('config.packages.BlasLapack',self)
File "/home/parallels/DummyFolder/PETSC/config/BuildSystem/config/framework.py", line 326, in require
config = self.getChild(moduleName, keywordArgs)
File "/home/parallels/DummyFolder/PETSC/config/BuildSystem/config/framework.py", line 306, in getChild
config.setupDependencies(self)
File "/home/parallels/DummyFolder/PETSC/config/BuildSystem/config/packages/BlasLapack.py", line 22, in setupDependencies
config.package.Package.setupDependencies(self, framework)
File "/home/parallels/DummyFolder/PETSC/config/BuildSystem/config/package.py", line 119, in setupDependencies
self.mpi = framework.require('config.packages.MPI',self)
File "/home/parallels/DummyFolder/PETSC/config/BuildSystem/config/framework.py", line 326, in require
config = self.getChild(moduleName, keywordArgs)
File "/home/parallels/DummyFolder/PETSC/config/BuildSystem/config/framework.py", line 306, in getChild
config.setupDependencies(self)
File "/home/parallels/DummyFolder/PETSC/config/BuildSystem/config/packages/MPI.py", line 62, in setupDependencies
self.mpich = framework.require('config.packages.MPICH', self)
File "/home/parallels/DummyFolder/PETSC/config/BuildSystem/config/framework.py", line 326, in require
config = self.getChild(moduleName, keywordArgs)
File "/home/parallels/DummyFolder/PETSC/config/BuildSystem/config/framework.py", line 304, in getChild
config.setup()
File "/home/parallels/DummyFolder/PETSC/config/BuildSystem/script.py", line 101, in setup
logger.Logger.setup(self)
File "/home/parallels/DummyFolder/PETSC/config/BuildSystem/logger.py", line 85, in setup
args.ArgumentProcessor.setup(self)
File "/home/parallels/DummyFolder/PETSC/config/BuildSystem/args.py", line 75, in setup
self.setupArguments(self.argDB)
File "/home/parallels/DummyFolder/PETSC/config/BuildSystem/script.py", line 85, in setupArguments
self.setupHelp(self.help)
File "/home/parallels/DummyFolder/PETSC/config/BuildSystem/config/packages/MPICH.py", line 24, in setupHelp
config.package.GNUPackage.setupHelp(self,help)
File "/home/parallels/DummyFolder/PETSC/config/BuildSystem/config/package.py", line 1224, in setupHelp
config.package.Package.setupHelp(self,help)
File "/home/parallels/DummyFolder/PETSC/config/BuildSystem/config/package.py", line 132, in setupHelp
help.addArgument(self.PACKAGE, '-download-'+self.package+'=<no,yes,filename,url>', nargs.ArgDownload(None, 0, 'Download and install '+self.name))
File "/home/parallels/DummyFolder/PETSC/config/BuildSystem/help.py", line 107, in addArgument
self.argDB.setType(self.getArgName(name), argType, forceLocal = 1)
File "/home/parallels/DummyFolder/PETSC/config/BuildSystem/RDict.py", line 213, in setType
value.setValue(v.getValue())
File "/home/parallels/DummyFolder/PETSC/config/BuildSystem/nargs.py", line 500, in setValue
raise ValueError('Invalid download location: '+str(value)+' for key '+str(self.key))
<font color="#8AE234"><b>parallels@parallels-Parallels-Virtual-Platform</b></font>:<font color="#729FCF"><b>~/DummyFolder/PETSC</b></font>$
</pre>
相反，我直接进入配置命令行。/configure stage complete.now build PETSc libraries with
<pre><font color="#8AE234"><b>parallels@parallels-Parallels-Virtual-Platform</b></font>:<font color="#729FCF"><b>~/DummyFolder/PETSC</b></font>$ ./configure
===============================================================================
Configuring PETSc to compile on your system
===============================================================================
Compilers:
C Compiler: mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3
C++ Compiler: mpicxx -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -fPIC
Fortran Compiler: mpif90 -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g
Linkers:
Shared linker: mpicc -shared -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3
Dynamic linker: mpicc -shared -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3
make:
BLAS/LAPACK: -llapack -lblas
MPI:
cmake:
Arch:
valgrind:
pthread:
PETSc:
PETSC_ARCH: arch-linux2-c-debug
PETSC_DIR: /home/parallels/DummyFolder/PETSC
Scalar type: real
Precision: double
Clanguage: C
Integer size: 32
shared libraries: enabled
Memory alignment: 16
xxx=========================================================================xxx
Configure stage complete. Now build PETSc libraries with (gnumake build):
make PETSC_DIR=/home/parallels/DummyFolder/PETSC PETSC_ARCH=arch-linux2-c-debug all
xxx=========================================================================xxx
<font color="#8AE234"><b>parallels@parallels-Parallels-Virtual-Platform</b></font>:<font color="#729FCF"><b>~/DummyFolder/PETSC</b></font>$ make PETSC_DIR=/home/parallels/DummyFolder/PETSC PETSC_ARCH=arch-linux2-c-debug all
+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
The version of PETSc you are using is out-of-date, we recommend updating to the new release
Available Version: 3.12.4 Installed Version: 3.8.3
http://www.mcs.anl.gov/petsc/download/index.html
+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
make[1]: 进入目录“/home/parallels/DummyFolder/PETSC”
==========================================
See documentation/faq.html and documentation/bugreporting.html
for help with installation problems. Please send EVERYTHING
printed out below when reporting problems. Please check the
mailing list archives and consider subscribing.
http://www.mcs.anl.gov/petsc/miscellaneous/mailing-lists.html
==========================================
Starting on parallels-Parallels-Virtual-Platform at Thu Apr 16 10:33:08 CST 2020
Machine characteristics: Linux parallels-Parallels-Virtual-Platform 4.15.0-34-generic #37-Ubuntu SMP Mon Aug 27 15:21:48 UTC 2018 x86_64 x86_64 x86_64 GNU/Linux
-----------------------------------------
Using PETSc directory: /home/parallels/DummyFolder/PETSC
Using PETSc arch: arch-linux2-c-debug
-----------------------------------------
PETSC_VERSION_RELEASE 1
PETSC_VERSION_MAJOR 3
PETSC_VERSION_MINOR 8
PETSC_VERSION_SUBMINOR 3
</pre>
……
……
……
<pre> FC arch-linux2-c-debug/obj/src/ksp/f90-mod/petsckspmod.o
FC arch-linux2-c-debug/obj/src/snes/f90-mod/petscsnesmod.o
FC arch-linux2-c-debug/obj/src/ts/f90-mod/petsctsmod.o
FC arch-linux2-c-debug/obj/src/tao/f90-mod/petsctaomod.o
CLINKER /home/parallels/DummyFolder/PETSC/arch-linux2-c-debug/lib/libpetsc.so.3.8.3
make[2]: 离开目录“/home/parallels/DummyFolder/PETSC”
=========================================
make[1]: 离开目录“/home/parallels/DummyFolder/PETSC”
Now to check if the libraries are working do:
make PETSC_DIR=/home/parallels/DummyFolder/PETSC PETSC_ARCH=arch-linux2-c-debug test
=========================================
<font color="#8AE234"><b>parallels@parallels-Parallels-Virtual-Platform</b></font>:<font color="#729FCF"><b>~/DummyFolder/PETSC</b></font>$ ^C
<font color="#8AE234"><b>parallels@parallels-Parallels-Virtual-Platform</b></font>:<font color="#729FCF"><b>~/DummyFolder/PETSC</b></font>$ make PETSC_DIR=/home/parallels/DummyFolder/PETSC PETSC_ARCH=arch-linux2-c-debug test
Running test examples to verify correct installation
Using PETSC_DIR=/home/parallels/DummyFolder/PETSC and PETSC_ARCH=arch-linux2-c-debug
C/C++ example src/snes/examples/tutorials/ex19 run successfully with 1 MPI process
C/C++ example src/snes/examples/tutorials/ex19 run successfully with 2 MPI processes
Fortran example src/snes/examples/tutorials/ex5f run successfully with 1 MPI process
Completed test examples
=========================================
Now to evaluate the computer systems you plan use - do:
make PETSC_DIR=/home/parallels/DummyFolder/PETSC PETSC_ARCH=arch-linux2-c-debug streams
<font color="#8AE234"><b>parallels@parallels-Parallels-Virtual-Platform</b></font>:<font color="#729FCF"><b>~/DummyFolder/PETSC</b></font>$ make PETSC_DIR=/home/parallels/DummyFolder/PETSC PETSC_ARCH=arch-linux2-c-debug streams
cd src/benchmarks/streams; /usr/bin/make --no-print-directory PETSC_DIR=/home/parallels/DummyFolder/PETSC PETSC_ARCH=arch-linux2-c-debug streams
mpicc -o MPIVersion.o -c -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 -I/home/parallels/DummyFolder/PETSC/include -I/home/parallels/DummyFolder/PETSC/arch-linux2-c-debug/include `pwd`/MPIVersion.c
Running streams with 'mpiexec ' using 'NPMAX=2'
Number of MPI processes 1 Processor names parallels-Parallels-Virtual-Platform
Triad: 15990.2886 Rate (MB/s)
Number of MPI processes 2 Processor names parallels-Parallels-Virtual-Platform parallels-Parallels-Virtual-Platform
Triad: 31023.1764 Rate (MB/s)
------------------------------------------------
np speedup
1 1.0
2 1.94
Estimation of possible speedup of MPI programs based on Streams benchmark.
It appears you have 1 node(s)
<font color="#8AE234"><b>parallels@parallels-Parallels-Virtual-Pla</b></font></pre>
我尝试将 GCC 升级到最新版本，但没有任何变化
正如 Satish 在电子邮件中所说，您的机器可能 运行 内存不足。 gfort运行 在编译时可以占用更多的 2GB 内存。如果您不需要 Fort运行，另一种方法是使用 --with-fc=0.
进行配置