如何将多个 confusionMatrix 的输出保存到 r 中的单个 csv 文件？

Question

我已经使用以下代码

计算了多个站点的confusionMatrix()

    library(tidyverse)
    result <- df %>% 
      xtabs( ~ Observed + Forecasted + Station, data =.) %>% 
      array_tree(.,margin=3) %>% 
      map(~caret::confusionMatrix(as.table(.x)))

然后我尝试使用以下代码计算不同的基于混淆矩阵的索引

    as.matrix(result, what = "classes")
    as.matrix(result, what = "overall")

哪个returns:

   #>          [,1]   
   #> Aizawl   List,6  
   #> Serchhip List,6

我的问题是如何将输出写入 .csv 文件？

下面是一些示例数据来帮助说明我的问题：

    df = structure(list(Station = c("Aizawl", "Aizawl", "Aizawl", "Aizawl", 
    "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", 
    "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", 
    "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", 
    "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", 
    "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", 
    "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", 
    "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", 
    "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", 
    "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", 
    "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", 
    "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", 
    "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", 
    "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", 
    "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", 
    "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", 
    "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", 
    "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", 
    "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", 
    "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", 
    "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", 
    "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", 
    "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", 
    "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", "Aizawl", 
    "Serchhip", "Serchhip", "Serchhip", "Serchhip", "Serchhip", "Serchhip", 
    "Serchhip", "Serchhip", "Serchhip", "Serchhip", "Serchhip", "Serchhip", 
    "Serchhip", "Serchhip", "Serchhip", "Serchhip", "Serchhip", "Serchhip", 
    "Serchhip", "Serchhip", "Serchhip", "Serchhip", "Serchhip", "Serchhip", 
    "Serchhip", "Serchhip", "Serchhip", "Serchhip", "Serchhip", "Serchhip", 
    "Serchhip", "Serchhip", "Serchhip", "Serchhip", "Serchhip", "Serchhip", 
    "Serchhip", "Serchhip", "Serchhip", "Serchhip", "Serchhip", "Serchhip", 
    "Serchhip", "Serchhip", "Serchhip", "Serchhip", "Serchhip", "Serchhip", 
    "Serchhip", "Serchhip", "Serchhip", "Serchhip", "Serchhip", "Serchhip", 
    "Serchhip", "Serchhip", "Serchhip", "Serchhip", "Serchhip", "Serchhip", 
    "Serchhip", "Serchhip", "Serchhip", "Serchhip", "Serchhip", "Serchhip", 
    "Serchhip", "Serchhip", "Serchhip", "Serchhip", "Serchhip", "Serchhip", 
    "Serchhip", "Serchhip", "Serchhip", "Serchhip", "Serchhip", "Serchhip", 
    "Serchhip", "Serchhip", "Serchhip", "Serchhip", "Serchhip", "Serchhip", 
    "Serchhip", "Serchhip", "Serchhip", "Serchhip", "Serchhip", "Serchhip", 
    "Serchhip", "Serchhip", "Serchhip", "Serchhip", "Serchhip", "Serchhip", 
    "Serchhip", "Serchhip", "Serchhip", "Serchhip", "Serchhip", "Serchhip", 
    "Serchhip", "Serchhip", "Serchhip", "Serchhip", "Serchhip", "Serchhip", 
    "Serchhip", "Serchhip", "Serchhip", "Serchhip", "Serchhip", "Serchhip", 
    "Serchhip", "Serchhip", "Serchhip", "Serchhip", "Serchhip", "Serchhip", 
    "Serchhip", "Serchhip", "Serchhip", "Serchhip", "Serchhip", "Serchhip", 
    "Serchhip", "Serchhip", "Serchhip", "Serchhip", "Serchhip", "Serchhip", 
    "Serchhip", "Serchhip", "Serchhip", "Serchhip", "Serchhip", "Serchhip", 
    "Serchhip", "Serchhip", "Serchhip", "Serchhip", "Serchhip", "Serchhip", 
    "Serchhip", "Serchhip", "Serchhip", "Serchhip", "Serchhip", "Serchhip", 
    "Serchhip", "Serchhip", "Serchhip", "Serchhip", "Serchhip", "Serchhip", 
    "Serchhip", "Serchhip", "Serchhip", "Serchhip", "Serchhip", "Serchhip", 
    "Serchhip", "Serchhip", "Serchhip", "Serchhip", "Serchhip", "Serchhip"
    ), Observed = c(1, 1, 1, 5, 5, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 
    1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 3, 1, 1, 1, 1, 1, 1, 
    1, 3, 4, 3, 3, 3, 3, 3, 3, 3, 3, 3, 4, 3, 1, 1, 1, 1, 1, 1, 1, 
    1, 1, 1, 1, 3, 3, 4, 1, 1, 4, 1, 3, 1, 1, 1, 1, 1, 1, 1, 1, 1, 
    4, 4, 4, 3, 4, 1, 1, 1, 1, 1, 3, 5, 5, 5, 3, 1, 1, 3, 1, 1, 1, 
    1, 1, 5, 3, 4, 1, 1, 1, 1, 1, 3, 1, 4, 1, 1, 1, 1, 1, 4, 4, 5, 
    1, 5, 4, 5, 5, 5, 5, 1, 5, 1, 4, 5, 4, 4, 5, 4, 5, 5, 3, 1, 5, 
    3, 4, 3, 4, 5, 5, 5, 5, 4, 4, 5, 4, 4, 5, 5, 5, 5, 4, 5, 5, 5, 
    5, 5, 5, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 
    1, 1, 1, 1, 1, 1, 3, 5, 5, 1, 1, 3, 4, 1, 1, 1, 1, 1, 1, 1, 1, 
    3, 3, 1, 1, 1, 1, 1, 1, 1, 1, 1, 3, 1, 1, 1, 1, 1, 1, 1, 1, 1, 
    1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 5, 3, 
    3, 3, 1, 1, 1, 1, 1, 1, 1, 4, 4, 1, 3, 4, 1, 1, 1, 1, 1, 1, 1, 
    1, 4, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 4, 3, 
    6, 5, 5, 4, 1, 5, 1, 1, 1, 1, 4, 5, 5, 5, 5, 5, 5, 1, 1, 4, 1, 
    4, 4, 4, 5, 1, 1, 4, 3, 5, 4, 5, 5, 5, 5, 5, 4, 4, 4, 4, 5, 1, 
    6, 5, 5), Forecasted = c(1, 1, 1, 5, 5, 1, 1, 1, 5, 5, 1, 1, 
    1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 5, 5, 5, 5, 5, 1, 1, 1, 1, 1, 
    1, 1, 1, 1, 5, 5, 5, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 
    1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 4, 1, 4, 4, 1, 1, 5, 3, 1, 
    1, 1, 4, 5, 5, 5, 5, 1, 1, 1, 5, 5, 1, 5, 5, 5, 4, 5, 4, 4, 4, 
    3, 4, 4, 1, 1, 5, 5, 4, 4, 4, 1, 1, 1, 4, 4, 4, 4, 4, 4, 1, 1, 
    5, 4, 4, 5, 4, 4, 4, 4, 5, 4, 5, 5, 5, 5, 5, 4, 5, 5, 4, 1, 1, 
    4, 4, 5, 5, 5, 5, 1, 4, 5, 5, 1, 4, 4, 5, 5, 5, 5, 5, 5, 5, 5, 
    5, 5, 5, 5, 5, 5, 1, 1, 1, 5, 4, 1, 1, 1, 5, 4, 1, 1, 1, 1, 1, 
    1, 1, 1, 1, 1, 1, 1, 1, 5, 5, 5, 6, 5, 5, 1, 1, 1, 1, 1, 1, 1, 
    1, 1, 5, 5, 5, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 
    1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 4, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 
    1, 5, 5, 4, 1, 1, 1, 1, 1, 4, 1, 1, 1, 4, 4, 4, 4, 1, 4, 1, 3, 
    1, 1, 1, 4, 4, 4, 4, 4, 4, 1, 1, 1, 4, 4, 3, 5, 5, 5, 4, 3, 5, 
    5, 5, 5, 5, 4, 5, 5, 5, 4, 5, 4, 4, 5, 5, 4, 4, 5, 4, 1, 4, 4, 
    5, 5, 4, 5, 4, 5, 4, 5, 5, 5, 1, 4, 5, 5, 5, 4, 5, 5, 5, 5, 5, 
    5, 5, 5, 5, 5, 6)), row.names = c(NA, 333L), class = "data.frame")

提前感谢您提供的任何帮助！

Answer 1

在此示例中使用 as.matrix() 函数的问题在于您正在创建一个列表列表。而不是：

as.matrix(result, what = "classes")
as.matrix(result, what = "overall")

尝试创建数据框来存放您的结果，您可以通过遍历原始 result 列表来填充这些结果。下面的代码应该可以解决问题。

## iterate through all six parts of the confusionMatrix: "positive", "table", "overall", "byClass", "mode", "dots" 
for(i in 1:length(names(result[[1]]))){
  ##create a data frame to house the data for export
  data <- data.frame()
  ## iterate through all results; in the example we have Aizawl" and "Serchhip"
  for(j in 1:length(names(result))){
    ## load the data into a data frame
    df <- data.frame(result[[j]][i])
    ## if data is empty no need to alter or append to data frame so skip to next
    if(nrow(df)==0){next}
    ## add a name column for identifying between result sets; in the example we have Aizawl" and "Serchhip"
    df$name <- names(result)[j]
    ## append the loaded data to the data frame for export
    data <- rbind(data, df)
  }
  ## if data is empty no need to export, therefore skip to next
  if(nrow(data)==0){next}
  ## write the data to a csv with the name of the part of the condusionMatrix it contains
  ## row.names changed to TRUE based on OP's comments
  write.csv(data, file = paste0(names(result[[1]])[i],".csv"), row.names = TRUE, na = "")
}

除非您希望在使用 write.csv() 函数之前转换数据框。在这种情况下你可以使用

for(i in 1:length(names(result[[1]]))){
  data <- data.frame()
  for(j in 1:length(names(result))){
    df <- data.frame(result[[j]][i])
    if(nrow(df)==0){next}
    df$name <- names(result)[j]
    data <- rbind(data, df)
  }
  if(nrow(data)==0){next}
  assign(names(result[[1]])[i], data)
}

如何将多个 confusionMatrix 的输出保存到 r 中的单个 csv 文件？

How to save the output of multiple confusionMatrix to single csv file in r?

r

confusion-matrix

r-caret

tidyverse