anaconda 环境中的 Rstudio：我应该如何安装 R 包？

Question

我用anaconda新建了一个环境，安装了Rstudio。我的问题是：我现在应该如何安装 R 包？我应该使用 Rstudio --> 安装，还是从终端通过 conda install... 我刚刚尝试通过 Rstudio 安装 desolve 包并收到以下错误。太感谢了。里卡多

error:

ld: warning: directory not found for option '-L/opt/concourse/worker/volumes/live/59b7f007-fada-42cf-7435-5bbd0518eaa4/volume/r-base_1570124919999/_build_env/lib/gcc/x86_64-apple-darwin11.4.2/4.8.5'
ld: warning: directory not found for option '-L/opt/concourse/worker/volumes/live/59b7f007-fada-42cf-7435-5bbd0518eaa4/volume/r-base_1570124919999/_build_env/lib/gcc'
ld: warning: directory not found for option '-L/opt/concourse/worker/volumes/live/59b7f007-fada-42cf-7435-5bbd0518eaa4/volume/r-base_1570124919999/_build_env/lib'
ld: warning: directory not found for option '-L/opt/concourse/worker/volumes/live/59b7f007-fada-42cf-7435-5bbd0518eaa4/volume/r-base_1570124919999/_build_env/lib/gcc/x86_64-apple-darwin11.4.2/4.8.5'
ld: warning: directory not found for option '-L/opt/concourse/worker/volumes/live/59b7f007-fada-42cf-7435-5bbd0518eaa4/volume/r-base_1570124919999/_build_env/lib/gcc'
ld: warning: directory not found for option '-L/opt/concourse/worker/volumes/live/59b7f007-fada-42cf-7435-5bbd0518eaa4/volume/r-base_1570124919999/_build_env/lib'
ld: warning: -pie being ignored. It is only used when linking a main executable
ld: warning: object file (daux.o) was built for newer OSX version (10.15) than being linked (10.9)
ld: warning: object file (dintdy2.o) was built for newer OSX version (10.15) than being linked (10.9)
ld: warning: object file (ddaspk.o) was built for newer OSX version (10.15) than being linked (10.9)
ld: warning: object file (dlsoder.o) was built for newer OSX version (10.15) than being linked (10.9)
ld: warning: object file (dlinpk.o) was built for newer OSX version (10.15) than being linked (10.9)
ld: warning: object file (errmsg.o) was built for newer OSX version (10.15) than being linked (10.9)
ld: warning: object file (dvode.o) was built for newer OSX version (10.15) than being linked (10.9)
ld: warning: object file (dsparsk.o) was built for newer OSX version (10.15) than being linked (10.9)
ld: warning: object file (radau5.o) was built for newer OSX version (10.15) than being linked (10.9)
ld: warning: object file (opkda1.o) was built for newer OSX version (10.15) than being linked (10.9)
ld: warning: object file (opkdmain.o) was built for newer OSX version (10.15) than being linked (10.9)
ld: warning: object file (radau5a.o) was built for newer OSX version (10.15) than being linked (10.9)
ld: warning: object file (zvode.o) was built for newer OSX version (10.15) than being linked (10.9)
ld: unsupported tapi file type '!tapi-tbd' in YAML file '/Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/usr/lib/libm.tbd' for architecture x86_64
clang-10: error: linker command failed with exit code 1 (use -v to see invocation)
make: *** [/opt/anaconda3/envs/covid19/lib/R/share/make/shlib.mk:6: deSolve.dylib] Error 1
ERROR: compilation failed for package ‘deSolve’
* removing ‘/opt/anaconda3/envs/covid19/lib/R/library/deSolve’
Warning in install.packages :
  installation of package ‘deSolve’ had non-zero exit status

The downloaded source packages are in
    ‘/private/var/folders/fv/c75qz5qj7v5dfn49ynsjz5tw0000gp/T/RtmpIpVTT3/downloaded_packages’
Updating HTML index of packages in '.Library'
Making 'packages.html' ... done

Answer 1

Anaconda 是一个包 manager/self-contained 工作区，如果通过 conda 环境使用 R，应该使用它来安装包。

要安装 desolve，您需要从您的 conda 环境中运行以下内容。您可以在此处搜索 R 包的 conda 可用性：https://anaconda.org/conda-forge

conda install -c conda-forge r-desolve

根据我的经验，conda-forge 通常有更多更新版本的 R 包，应该先在那里寻找安装。

anaconda 环境中的 Rstudio：我应该如何安装 R 包？

Rstudio in anaconda environment: how should I install R packages?

r

anaconda

virtual-environment