我可以在 R facet plot 中保持条形宽度不变，每个 facet 中的类别数量不同吗？

Question

我希望有人能帮我解决我的问题：

我的数据由包含许多上调和下调基因的类别组成。我希望它们显示为水平堆叠的列。行得通
我用两种方法（Terms）对这些基因类别进行了排序，UP_Keyword 和 GO-Term。他们产生了不同数量的基因类别。 facet wrap没问题。

# A tibble: 10 x 4
   Category             Term       Reg   Reg_val  
   <chr>                 <chr>      <chr>   <dbl> 
 1 Transport            UP_Keyword Up         63  
 2 Transmembrane helix  UP_Keyword Up        341  
 3 Transmembrane        UP_Keyword Up        344  
 4 Transport            UP_Keyword Down        3  
 5 Transmembrane helix  UP_Keyword Down       12  
 6 Transmembrane        UP_Keyword Down        9  
 7 translation          GO_term    Up         41  
 8 glycolytic process   GO_term    Up          9  
 9 translation          GO_term    Down        0  
10 glycolytic process   GO_term    Down        1

structure(
  list(
    Category = c(
      "Transport",
      "Transmembrane helix",
      "Transmembrane",
      "Transport",
      "Transmembrane helix",
      "Transmembrane",
      "translation",
      "glycolytic process",
      "translation",
      "glycolytic process"
    ),
    Term = c(
      "UP_Keyword",
      "UP_Keyword",
      "UP_Keyword",
      "UP_Keyword",
      "UP_Keyword",
      "UP_Keyword",
      "GO_term",
      "GO_term",
      "GO_term",
      "GO_term"
    ),
    Reg = c(
      "Up",
      "Up",
      "Up",
      "Down",
      "Down",
      "Down",
      "Up",
      "Up",
      "Down",
      "Down"
    ),
    Reg_val = c(63, 341, 344, 3, 12,
                9, 41, 9, 0, 1)
  ),
  row.names = c(NA,-10L),
  class = c("tbl_df",
            "tbl", "data.frame")
)

ex_plot <- ggplot(example_data, aes(x=Reg_val, y=Category, fill=Reg))+
  geom_col(width=0.5)+
  facet_wrap(.~Term, nrow=2, scales="free")

This is how my plot looks now

我希望条形在所有方面都具有相同的宽度。有办法吗？
我在这里找到了一个可能的解决方案：https://community.rstudio.com/t/preserve-constant-bar-widths-for-uneven-faceted-plots/26837 但是，简单地在 facet_wrap() 中添加 space="free" 不会导致任何变化，但会出现警告：未使用的参数 (space = "free")

如果有人能解决我的问题，我将不胜感激。请尝试用普通生物学家能理解的方式解释。

Answer 1

指定方面的 facet_wrap() 方式不允许使用 space = "free" 参数；这是 facet_grid().

的论点

根据您希望条带 labels/facet 标题的位置，您可以使用 facet_grid() 或使用 ggforce 包中的 facet_row()。示例如下。

library(ggplot2)

df <- data.frame(
  Category = c("Transport", "Transmembrane helix", "Transmembrane",
               "Transport", "Transmembrane helix", "Transmembrane",
               "translation", "glycolytic process",
               "translation", "glycolytic process"),
  Term = rep(c("UP_Keyword", "GO_term"), c(6, 4)),
  Reg = rep(c("Up", "Down", "Up", "Down"), c(3, 3, 2, 2)),
  Reg_val = c(63, 341, 344, 3, 12, 9, 41, 9, 0, 1)
)

# Make the core plot
plot <- ggplot(df, aes(Reg_val, Category, fill = Reg)) +
  geom_col(width = 0.5)

plot + facet_grid(Term ~ ., scales = "free", space = "free")

plot + ggforce::facet_col(~ Term, space = "free", scales = "free_y")

^{由 reprex package (v0.3.0)}

于 2021-01-03 创建

我可以在 R facet plot 中保持条形宽度不变，每个 facet 中的类别数量不同吗？

Can I keep bar width constant in R facet plot with different number of categories in each facet?

r

ggplot2

facet-wrap

fixed-width