Python Mlens Ensemble: KeyError: "None of [Int64Index([... dtype='int64', length=105)] are in the [columns]"

Question

以下是我收到此错误的一小段代码：KeyError: "None of [Int64Index([...], dtype='int64')] are in the [列]

'...' 是一系列数字，似乎与我的 X 和 y 数据帧的索引相匹配。

我正在使用 Mlens 包在非常大的数据集上使用 SuperLearner 进行建模（因此可扩展性很重要）。我的目标是使用数据帧结构而不是 Numpy 数组。这将解决下游问题。

到目前为止，我已经探索了 this 和其他相关帖子，但解决方案似乎不适用于此处。

数据集是在此处找到的 Iris 数据集，格式为 .csv：

请注意，自定义随机森林函数效果很好。但是 mlens/SuperLearner 错误。

from sklearn.ensemble import ExtraTreesClassifier, RandomForestClassifier
from sklearn.feature_selection import SelectFromModel
from sklearn.linear_model import LogisticRegression
from sklearn.metrics import accuracy_score
from sklearn.model_selection import train_test_split
from sklearn.preprocessing import StandardScaler
from mlens.ensemble.super_learner import SuperLearner
import numpy as np
import pandas as pd

df = pd.read_csv("/home/marktest/iris_csv.csv")
type(df)
N_FOLDS = 5
RF_ESTIMATORS = 100
RANDOM_STATE = 42
class RFBasedFeatureSelector(BaseEstimator):
  
    def __init__(self, n_estimators):
        self.n_estimators = n_estimators
        self.selector = None

    def fit(self, X, y):
        clf = RandomForestClassifier(n_estimators=self.n_estimators, random_state = RANDOM_STATE, class_weight = 'balanced')
        clf = clf.fit(X, y)
        self.selector = SelectFromModel(clf, prefit=True, threshold = 0.01)

    def transform(self, X):
        if self.selector is None:
            raise AttributeError('The selector attribute has not been assigned. You cannot call transform before first calling fit or fit_transform.')
        return self.selector.transform(X)

    def fit_transform(self, X, y):
        self.fit(X, y)
        return self.transform(X)
df.head()
X = df.iloc[:,0:3]                                    # split off features into new dataframe
y = df.iloc[:,4]                                     # split off outcome into new dataframe

X, X_val, y, y_val = train_test_split(X, y, test_size=.3, random_state=RANDOM_STATE, stratify=y)
from mlens.metrics import make_scorer
from sklearn.metrics import roc_auc_score, balanced_accuracy_score
accuracy_scorer = make_scorer(roc_auc_score, average='micro', greater_is_better=True)

clf = RandomForestClassifier(RF_ESTIMATORS, random_state=RANDOM_STATE,class_weight='balanced')
scaler = StandardScaler()
feature_selector = RFBasedFeatureSelector(RF_ESTIMATORS)
clf.fit(feature_selector.fit_transform(scaler.fit_transform(X), y), y)
accuracy_score(y_val, clf.predict(feature_selector.transform(scaler.transform(X_val))))

ensemble = SuperLearner(folds=N_FOLDS, shuffle=True, random_state=RANDOM_STATE, scorer=balanced_accuracy_score, backend="threading")

preprocessing = {'pipeline-1': [StandardScaler(), RFBasedFeatureSelector(RF_ESTIMATORS)]
                 
                }

estimators = {'pipeline-1': [RandomForestClassifier(RF_ESTIMATORS, random_state=RANDOM_STATE, class_weight='balanced'),                 
                                         ]
                 }

ensemble.add(estimators, preprocessing)

ensemble.add_meta(LogisticRegression(solver='liblinear', class_weight = 'balanced'))
ensemble.fit(X,y)```

Answer 1

我认为问题出在shuffle=True。我遇到了类似的问题，当设置 'shuffle=False' 时，它不再给出错误消息。

Python Mlens Ensemble: KeyError: "None of [Int64Index([... dtype='int64', length=105)] are in the [columns]"

Python Mlens Ensemble: KeyError: "None of [Int64Index([... dtype='int64', length=105)] are in the [columns]"

python

pandas

scikit-learn

superlearner