在 R 中的 ggplot 图中添加优势比值和不同颜色

Question

我正在尝试在图表中插入优势比值。我还尝试为具有显着优势比的形状赋予不同的颜色。显着优势比是指置信区间不包括值 1 的那些。有人可以帮我解决这个问题吗？

我的代码示例是：

df <- data.frame(yAxis = length(boxLabels):1,
boxOdds = c(2.23189,1.315737,1.22866,.8197413,.9802449,.9786673,.6559005,.5929812),
boxCILow = c(.7543566,1.016,.9674772,.6463458,.9643047,.864922,.4965308,.3572142),
boxCIHigh = c(6.603418,1.703902,1.560353,1.039654,.9964486,1.107371,.8664225,.9843584))

绘制图形

ggplot(df, aes(x = boxOdds, y = boxLabels)) +
  geom_vline(aes(xintercept = 1), size = .25, linetype = 'dashed') +
  geom_errorbarh(aes(xmax = boxCIHigh, xmin = boxCILow), size = .5, height = 
      .2, color = 'gray50') +
  geom_point(size = 3.5, color = 'orange') +
  theme_bw() +
  theme(panel.grid.minor = element_blank()) +
  scale_x_continuous(breaks = seq(0,7,1) ) +
  coord_trans(x = 'log10') +
  ylab('') +
  xlab('Odds ratio (log scale)') +
  annotate(geom = 'text', y =1.1, x = 3.5, label ='Model p < 0.001\nPseudo 
R^2 = 0.10', size = 3.5, hjust = 0) + ggtitle('My title')

Answer 1

我为 boxLabels 创建了一个虚拟变量，因为你的代码缺少它。

你未来的情节需要注意一件事：预先定义绘图 所需的一切 。例如详细说明您的测试是否重要的变量。

boxLabels <- letters[1:8] # dummy boxlabels variable

df <- data.frame(yAxis = length(boxLabels):1,
    boxOdds = c(2.23189,1.315737,1.22866,.8197413,.9802449,.9786673,.6559005,.5929812),
    boxCILow = c(.7543566,1.016,.9674772,.6463458,.9643047,.864922,.4965308,.3572142),
    boxCIHigh = c(6.603418,1.703902,1.560353,1.039654,.9964486,1.107371,.8664225,.9843584),
    boxLabels = boxLabels # Don't forget to actually put it in the dataframe if you use it in the plot.
) 

# Make a variable for whether your test is significant
df$isSignif <- df$boxCILow > 1 | df$boxCIHigh < 1

g <- ggplot(df, aes(x = boxOdds, y = boxLabels)) +
  geom_vline(aes(xintercept = 1), size = .25, linetype = 'dashed') +
  geom_errorbarh(aes(xmax = boxCIHigh, xmin = boxCILow), size = .5, height = 
      .2, color = 'gray50') +
  geom_point(aes(color = isSignif), size = 3.5) + ## Use the variable to define the color of your plot.
  theme_bw() +
  theme(panel.grid.minor = element_blank()) +
  scale_x_continuous(breaks = seq(0,7,1) ) +
  coord_trans(x = 'log10') +
  ylab('') +
  xlab('Odds ratio (log scale)') +
  annotate(geom = 'text', y =1.1, x = 3.5, label ='Model p < 0.001\nPseudo 
R^2 = 0.10', size = 3.5, hjust = 0) + ggtitle('My title')

# add the oddsRatio values to the plot
g <- g + geom_text(label=round(df$boxOdds, 2), nudge_y=0.25)
g

我从你的代码中更改的唯一行是带有注释的行。

这将输出以下图：

在 R 中的 ggplot 图中添加优势比值和不同颜色

Adding odds ratios values and different colors in a ggplot graph in R

plot

r

colors

ggplot2

glm