R：Oxforddown 在 pdf 中对我所有的行进行编号……这是什么问题？
R: Oxforddown numbers all my lines in pdf... What is the issue?
我正在准备我的硕士论文，并接受了与 2 名学生一起在 R 中完成所有工作的挑战。
我使用了 Ulrik Lyngs 的模板。修改了index.Rmd。但是现在我所有的行都被编号了...
index.Rmd 代码见下文。
我必须做的才能让它工作（构建论文），是下载 MacTex 并卸载 tinyTex。但是我真的不知道哪里出了问题。
---
#####################
## thesis metadata ##
#####################
title: |
Thesis title
author: Faes, E.
college: Master in Finance
university: Antwerp Management School
university-logo: templates/beltcrest.pdf
submitted-text: A thesis submitted for the degree of
degree: Master in Finance
degreedate: June 2021
abstract: |
`r paste(readLines("front-and-back-matter/_abstract.Rmd"), collapse = '\n ')`
acknowledgements: |
`r paste(readLines("front-and-back-matter/_acknowledgements.Rmd"), collapse = '\n ')`
dedication: For Yihui Xie
abbreviations: "front-and-back-matter/abbreviations" # path to .tex file with abbreviations
#######################
## bibliography path ##
#######################
bibliography: references.bib
########################
## PDF layout options ###
#########################
masters-submission: false
corrections: false # correction highlighting
## binding / margins ##
page-layout: twoside #'nobind' for equal margins (PDF output), 'twoside' for two-sided binding (mirror margins and blank pages), leave blank for one-sided binding (left margin > right margin)
## position of page numbers ##
ordinary-page-number-foot-or-head: foot #'foot' puts page number in footer, 'head' in header
ordinary-page-number-position: C #C = center, R = right, L = left. If page layout is 'twoside', O = odd pages and E = even pages. E.g. RO,LE puts the page number to the right on odd pages and left on even pages
chapter-page-number-foot-or-head: foot #you may want it to be different on the chapter pages
chapter-page-number-position: C
## position of running header ##
running-header: true #indicate current chapter/section in header?
running-header-foot-or-head: head
running-header-position-leftmark: LO #marks the chapter. If layout is 'nobind', only this is used.
running-header-position-rightmark: RE #marks the section.
draft-mark: false # add a DRAFT mark?
draft-mark-foot-or-head: foot ##'foot' = in footer, 'head' = in header
draft-mark-position: C
## section numbering ##
section-numbering-depth: 2 # to which depth should headings be numbered?
## tables of content ##
toc-depth: 2 # to which depth should headings be included in table of contents?
lof: true # include list of figures in front matter?
lot: true # include list of tables in front matter?
mini-toc: false # include mini-table of contents at start of each chapter? (this just prepares it; you must also add \minitoc after the chapter titles)
mini-lot: false # include mini-list of tables by start of each chapter?
mini-lof: false # include mini-list of figures by start of each chapter?
## code block spacing ##
space-before-code-block: 10pt
space-after-code-block: 8pt
## linespacing ##
linespacing: 22pt plus2pt # 22pt is official for submission & library copies
frontmatter-linespacing: 17pt plus1pt minus1pt #spacing in roman-numbered pages (acknowledgments, table of contents, etc.)
### other stuff ###
abstractseparate: false # include front page w/ abstract for examination schools?
hidelinks: true # false to highlight clickable links with a colored border
includeline-num: true
### citation and bibliography style ###
bibliography-heading-in-pdf: Works Cited
# biblatex options #
# unless you run into 'biber' error messages, use natbib as it lets you customise your bibliography directly
use-biblatex: true
bib-latex-options: "style=authoryear, sorting=nyt, backend=biber, maxcitenames=2, useprefix, doi=true, isbn=false, uniquename=false" #for science, you might want style=numeric-comp, sorting=none for numerical in-text citation with references in order of appearance
# natbib options #
# natbib runs into fewer errors than biblatex, but to customise your bibliography you need to fiddle with .bst files
use-natbib: false # to use natbib, set this to true, and change "output:bookdown::pdf_book:citation_package:" to "natbib"
natbib-citation-style: authoryear #for science, you might want numbers,square
natbib-bibliography-style: ACM-Reference-Format #or plainnat or some .bst file you download
#####################
## output options ##
#####################
output:
bookdown::pdf_book:
citation_package: biblatex
template: templates/template.tex
keep_tex: true
#pandoc_args: "--lua-filter=scripts_and_filters/colour_and_highlight.lua"
bookdown::bs4_book:
css:
- templates/bs4_style.css
- templates/corrections.css # remove to stop highlighting corrections
theme:
primary: "#6D1919"
repo: https://github.com/ulyngs/oxforddown
#pandoc_args: "--lua-filter=scripts_and_filters/colour_and_highlight.lua"
bookdown::gitbook:
css: templates/style.css
config:
sharing:
facebook: false
twitter: yes
all: false
bookdown::word_document2:
toc: true
link-citations: true
documentclass: book
always_allow_html: true #this allows html stuff in word (.docx) output
# The lines below make the 'knit' button render the whole thesis to PDF, HTML, or Word
# When outputting to PDF, you can clean up the files LaTeX generates by running
# 'file.remove(list.files(pattern = "*.(log|mtc|maf|aux|bbl|blg|xml)"))' in the R console
knit: (function(input, ...) {bookdown::render_book(input, output_format = "bookdown::pdf_book")})
#knit: (function(input, ...) {bookdown::render_book(input, output_format = "bookdown::bs4_book")})
#knit: (function(input, ...) {bookdown::render_book(input, output_format = "bookdown::gitbook")})
#knit: (function(input, ...) {bookdown::render_book(input, output_format = "bookdown::word_document2")})
---
```{r install_packages, include=FALSE}
source('scripts_and_filters/install_packages_if_missing.R')
```
```{r create_chunk_options, include=FALSE, eval=knitr::is_latex_output()}
source('scripts_and_filters/create_chunk_options.R')
source('scripts_and_filters/wrap_lines.R')
```
<!--
Include the create_chunk_options chunk above at the top of your index.Rmd file
This will include code to create additional chunk options (e.g. for adding author references to savequotes)
and to make sure lines in code soft wrap
If you need to create your own additional chunk options, edit the file scripts/create_chunk_options.R
-->
<!-- This chunk includes the front page content in HTML output -->
```{r ebook-welcome, child = 'front-and-back-matter/_welcome-ebook.Rmd', eval=knitr::is_html_output()}
```
编号的行对审稿人来说非常好。你不希望它们出现在论文的最终提交版本中，但审稿人能够说“你在第 13 行重复了谢谢”这个词是很好的，而不是让他们自己数行。
要打开它们，请保持
includeline-num: true
在你的 YAML 中。要关闭它们，请将其设置为 false.
我正在准备我的硕士论文，并接受了与 2 名学生一起在 R 中完成所有工作的挑战。
我使用了 Ulrik Lyngs 的模板。修改了index.Rmd。但是现在我所有的行都被编号了...
index.Rmd 代码见下文。 我必须做的才能让它工作（构建论文），是下载 MacTex 并卸载 tinyTex。但是我真的不知道哪里出了问题。
---
#####################
## thesis metadata ##
#####################
title: |
Thesis title
author: Faes, E.
college: Master in Finance
university: Antwerp Management School
university-logo: templates/beltcrest.pdf
submitted-text: A thesis submitted for the degree of
degree: Master in Finance
degreedate: June 2021
abstract: |
`r paste(readLines("front-and-back-matter/_abstract.Rmd"), collapse = '\n ')`
acknowledgements: |
`r paste(readLines("front-and-back-matter/_acknowledgements.Rmd"), collapse = '\n ')`
dedication: For Yihui Xie
abbreviations: "front-and-back-matter/abbreviations" # path to .tex file with abbreviations
#######################
## bibliography path ##
#######################
bibliography: references.bib
########################
## PDF layout options ###
#########################
masters-submission: false
corrections: false # correction highlighting
## binding / margins ##
page-layout: twoside #'nobind' for equal margins (PDF output), 'twoside' for two-sided binding (mirror margins and blank pages), leave blank for one-sided binding (left margin > right margin)
## position of page numbers ##
ordinary-page-number-foot-or-head: foot #'foot' puts page number in footer, 'head' in header
ordinary-page-number-position: C #C = center, R = right, L = left. If page layout is 'twoside', O = odd pages and E = even pages. E.g. RO,LE puts the page number to the right on odd pages and left on even pages
chapter-page-number-foot-or-head: foot #you may want it to be different on the chapter pages
chapter-page-number-position: C
## position of running header ##
running-header: true #indicate current chapter/section in header?
running-header-foot-or-head: head
running-header-position-leftmark: LO #marks the chapter. If layout is 'nobind', only this is used.
running-header-position-rightmark: RE #marks the section.
draft-mark: false # add a DRAFT mark?
draft-mark-foot-or-head: foot ##'foot' = in footer, 'head' = in header
draft-mark-position: C
## section numbering ##
section-numbering-depth: 2 # to which depth should headings be numbered?
## tables of content ##
toc-depth: 2 # to which depth should headings be included in table of contents?
lof: true # include list of figures in front matter?
lot: true # include list of tables in front matter?
mini-toc: false # include mini-table of contents at start of each chapter? (this just prepares it; you must also add \minitoc after the chapter titles)
mini-lot: false # include mini-list of tables by start of each chapter?
mini-lof: false # include mini-list of figures by start of each chapter?
## code block spacing ##
space-before-code-block: 10pt
space-after-code-block: 8pt
## linespacing ##
linespacing: 22pt plus2pt # 22pt is official for submission & library copies
frontmatter-linespacing: 17pt plus1pt minus1pt #spacing in roman-numbered pages (acknowledgments, table of contents, etc.)
### other stuff ###
abstractseparate: false # include front page w/ abstract for examination schools?
hidelinks: true # false to highlight clickable links with a colored border
includeline-num: true
### citation and bibliography style ###
bibliography-heading-in-pdf: Works Cited
# biblatex options #
# unless you run into 'biber' error messages, use natbib as it lets you customise your bibliography directly
use-biblatex: true
bib-latex-options: "style=authoryear, sorting=nyt, backend=biber, maxcitenames=2, useprefix, doi=true, isbn=false, uniquename=false" #for science, you might want style=numeric-comp, sorting=none for numerical in-text citation with references in order of appearance
# natbib options #
# natbib runs into fewer errors than biblatex, but to customise your bibliography you need to fiddle with .bst files
use-natbib: false # to use natbib, set this to true, and change "output:bookdown::pdf_book:citation_package:" to "natbib"
natbib-citation-style: authoryear #for science, you might want numbers,square
natbib-bibliography-style: ACM-Reference-Format #or plainnat or some .bst file you download
#####################
## output options ##
#####################
output:
bookdown::pdf_book:
citation_package: biblatex
template: templates/template.tex
keep_tex: true
#pandoc_args: "--lua-filter=scripts_and_filters/colour_and_highlight.lua"
bookdown::bs4_book:
css:
- templates/bs4_style.css
- templates/corrections.css # remove to stop highlighting corrections
theme:
primary: "#6D1919"
repo: https://github.com/ulyngs/oxforddown
#pandoc_args: "--lua-filter=scripts_and_filters/colour_and_highlight.lua"
bookdown::gitbook:
css: templates/style.css
config:
sharing:
facebook: false
twitter: yes
all: false
bookdown::word_document2:
toc: true
link-citations: true
documentclass: book
always_allow_html: true #this allows html stuff in word (.docx) output
# The lines below make the 'knit' button render the whole thesis to PDF, HTML, or Word
# When outputting to PDF, you can clean up the files LaTeX generates by running
# 'file.remove(list.files(pattern = "*.(log|mtc|maf|aux|bbl|blg|xml)"))' in the R console
knit: (function(input, ...) {bookdown::render_book(input, output_format = "bookdown::pdf_book")})
#knit: (function(input, ...) {bookdown::render_book(input, output_format = "bookdown::bs4_book")})
#knit: (function(input, ...) {bookdown::render_book(input, output_format = "bookdown::gitbook")})
#knit: (function(input, ...) {bookdown::render_book(input, output_format = "bookdown::word_document2")})
---
```{r install_packages, include=FALSE}
source('scripts_and_filters/install_packages_if_missing.R')
```
```{r create_chunk_options, include=FALSE, eval=knitr::is_latex_output()}
source('scripts_and_filters/create_chunk_options.R')
source('scripts_and_filters/wrap_lines.R')
```
<!--
Include the create_chunk_options chunk above at the top of your index.Rmd file
This will include code to create additional chunk options (e.g. for adding author references to savequotes)
and to make sure lines in code soft wrap
If you need to create your own additional chunk options, edit the file scripts/create_chunk_options.R
-->
<!-- This chunk includes the front page content in HTML output -->
```{r ebook-welcome, child = 'front-and-back-matter/_welcome-ebook.Rmd', eval=knitr::is_html_output()}
```
编号的行对审稿人来说非常好。你不希望它们出现在论文的最终提交版本中，但审稿人能够说“你在第 13 行重复了谢谢”这个词是很好的，而不是让他们自己数行。
要打开它们，请保持
includeline-num: true
在你的 YAML 中。要关闭它们，请将其设置为 false.