TensorFlow

Question

我尝试了运行来自 stellargraph's examples 的例子，但我遇到了一个奇怪的错误：

tensorflow/core/framework/op_kernel.cc:1744] OP_REQUIRES failed at cast_op.cc:121 : Unimplemented: Cast string to float is not supported

我使用的示例代码是这样的：

import pandas as pd
import numpy as np

import stellargraph as sg
from stellargraph.mapper import PaddedGraphGenerator
from stellargraph.layer import GCNSupervisedGraphClassification
from stellargraph import StellarGraph

from stellargraph import datasets

from sklearn import model_selection
from IPython.display import display, HTML

from tensorflow.keras import Model
from tensorflow.keras.optimizers import Adam
from tensorflow.keras.layers import Dense
from tensorflow.keras.losses import binary_crossentropy
from tensorflow.keras.callbacks import EarlyStopping
import tensorflow as tf
import matplotlib.pyplot as plt

dataset = datasets.MUTAG()
display(HTML(dataset.description))
graphs, graph_labels = dataset.load()

print(graphs[0].info())
print(graphs[1].info())

summary = pd.DataFrame(
    [(g.number_of_nodes(), g.number_of_edges()) for g in graphs],
    columns=["nodes", "edges"],
)
print(summary.describe().round(1))

generator = PaddedGraphGenerator(graphs=graphs)

def create_graph_classification_model(generator):
    gc_model = GCNSupervisedGraphClassification(
        layer_sizes=[64, 64],
        activations=["relu", "relu"],
        generator=generator,
        dropout=0.5,
    )
    x_inp, x_out = gc_model.in_out_tensors()
    predictions = Dense(units=32, activation="relu")(x_out)
    predictions = Dense(units=16, activation="relu")(predictions)
    predictions = Dense(units=1, activation="sigmoid")(predictions)

    # Let's create the Keras model and prepare it for training
    model = Model(inputs=x_inp, outputs=predictions)
    model.compile(optimizer=Adam(0.005), loss=binary_crossentropy, metrics=["acc"])

    return model

epochs = 200  # maximum number of training epochs
folds = 10  # the number of folds for k-fold cross validation
n_repeats = 5  # the number of repeats for repeated k-fold cross validation
es = EarlyStopping(
    monitor="val_loss", min_delta=0, patience=25, restore_best_weights=True
)

def train_fold(model, train_gen, test_gen, es, epochs):
    history = model.fit(
        train_gen, epochs=epochs, validation_data=[test_gen], verbose=0, callbacks=es,
    )
    # calculate performance on the test data and return along with history
    test_metrics = model.evaluate(test_gen, verbose=0)
    test_acc = test_metrics[model.metrics_names.index("acc")]

    return history, test_acc

def get_generators(train_index, test_index, graph_labels, batch_size):
    train_gen = generator.flow(
        train_index, targets=graph_labels.iloc[train_index].values, batch_size=batch_size
    )
    test_gen = generator.flow(
        test_index, targets=graph_labels.iloc[test_index].values, batch_size=batch_size
    )

    return train_gen, test_gen

test_accs = []

stratified_folds = model_selection.RepeatedStratifiedKFold(
    n_splits=folds, n_repeats=n_repeats
).split(graph_labels, graph_labels)

for i, (train_index, test_index) in enumerate(stratified_folds):
    print(f"Training and evaluating on fold {i+1} out of {folds * n_repeats}...")
    train_gen, test_gen = get_generators(
        train_index, test_index, graph_labels, batch_size=30
    )

    model = create_graph_classification_model(generator)

    history, acc = train_fold(model, train_gen, test_gen, es, epochs)

    test_accs.append(acc)

print(
    f"Accuracy over all folds mean: {np.mean(test_accs)*100:.3}% and std: {np.std(test_accs)*100:.2}%"
)

整个错误消息是：

2021-05-14 03:23:24.176132: I tensorflow/compiler/mlir/mlir_graph_optimization_pass.cc:176] None of the MLIR Optimization Passes are enabled (registered 2)
2021-05-14 03:23:24.982603: W tensorflow/core/framework/op_kernel.cc:1744] OP_REQUIRES failed at cast_op.cc:121 : Unimplemented: Cast string to float is not supported
Traceback (most recent call last):
  File "C:/Users/1/PycharmProjects/University Homework/exmpl.py", line 96, in <module>
    history, acc = train_fold(model, train_gen, test_gen, es, epochs)
  File "C:/Users/1/PycharmProjects/University Homework/exmpl.py", line 63, in train_fold
    history = model.fit(
  File "C:\Users\AppData\Local\Programs\Python\Python38\lib\site-packages\tensorflow\python\keras\engine\training.py", line 1183, in fit
    tmp_logs = self.train_function(iterator)
  File "C:\Users\AppData\Local\Programs\Python\Python38\lib\site-packages\tensorflow\python\eager\def_function.py", line 889, in __call__
    result = self._call(*args, **kwds)
  File "C:\Users\AppData\Local\Programs\Python\Python38\lib\site-packages\tensorflow\python\eager\def_function.py", line 950, in _call
    return self._stateless_fn(*args, **kwds)
  File "C:\Users\AppData\Local\Programs\Python\Python38\lib\site-packages\tensorflow\python\eager\function.py", line 3023, in __call__
    return graph_function._call_flat(
  File "C:\Users\AppData\Local\Programs\Python\Python38\lib\site-packages\tensorflow\python\eager\function.py", line 1960, in _call_flat
    return self._build_call_outputs(self._inference_function.call(
  File "C:\Users\AppData\Local\Programs\Python\Python38\lib\site-packages\tensorflow\python\eager\function.py", line 591, in call
    outputs = execute.execute(
  File "C:\Users\AppData\Local\Programs\Python\Python38\lib\site-packages\tensorflow\python\eager\execute.py", line 59, in quick_execute
    tensors = pywrap_tfe.TFE_Py_Execute(ctx._handle, device_name, op_name,
tensorflow.python.framework.errors_impl.UnimplementedError:  Cast string to float is not supported
     [[node binary_crossentropy/Cast (defined at /Users/1/PycharmProjects/University Homework/exmpl.py:63) ]] [Op:__inference_train_function_1247]

Function call stack:
train_function

我找不到 任何地方 一个被赋予字符串值的浮点数，所以我不确定这里发生了什么。感谢您的帮助！

Answer 1

显然，添加行：

graph_labels = pd.get_dummies(graph_labels, drop_first=True)

在创建 PaddedGraphGenerator 之前似乎解决了这个问题。

TensorFlow - 无法将字符串转换为浮点错误？

TensorFlow - cannot cast string to float error?

python

stellargraph