使用效果包更改布局顺序：R

Question

我只想使用 Effects 包绘制多项式回归的一个类别。

示例：

library(nnet)
m1 <- multinom(Species ~ Sepal.Width * Petal.Width + Sepal.Length, data = iris)
plt <- effect("Sepal.Width * Petal.Width", m1, x.var = "Sepal.Width")
plot(plt, x.var = "Sepal.Width",
 lattice = list(strip = list(factor.names = F)),
 confint = list(style="auto", col = "black"),
 axes = list(grid = T, 
             x = list(rug = F)))

这给了我以下信息： https://i.stack.imgur.com/fdOw5.png

有什么方法可以只绘制，例如，class Versicolor 吗？已经尝试使用 layout() 但我只能绘制 Setosa 和 Versicolor：

plot(plt, x.var = "Sepal.Width",
 lattice = list(strip = list(factor.names = F),
                layout = c(5, 2, 1)),
 confint = list(style="auto", col = "black"),
 axes = list(grid = T, 
             x = list(rug = F)))

如果我将 layout = c(5, 2, 1) 更改为 layout = c(5, 1, 1)，它只会显示 Setosa。

谢谢！

Answer 1

我找到的最简单的方法是使用 ggplot2。

首先，我必须将 object（从 effect()）转换为数据框，然后从那里开始：

示例：

m1 <- multinom(Species ~ Sepal.Width * Petal.Width + Sepal.Length, data = iris)
plt <- effect("Sepal.Width * Petal.Width", m1)

plt_df <- data.frame(plt) # creating a data frame

并使用 ggplot2 绘图：

ggplot(data = plt_df, aes(x = Sepal.Width, 
                        y = prob.versicolor,
                        ymin = L.prob.versicolor,  # Lower CI
                        ymax = U.prob.versicolor)) + # Upper CI
geom_ribbon(alpha = 0.2) +  # For CI
geom_line() +  
facet_wrap(~Petal.Width, ncol = 5) +
# Few things to custoimze
scale_y_continuous("Predicted Probabilities Y",
                     # axes on top / right sides
                     sec.axis = dup_axis(),
                     breaks = c(0, 0.25, 0.5, .75, 1),
                     labels = c("0%" , "25%", "50%", "75%", "100%")) + 
scale_x_continuous("Sepal Width") + 
theme_bw() +
theme(plot.title = element_text(hjust = 0.5),
        strip.placement = "outside",   
        ## If you want to point axis ticks inwards:
        ### (2.75pt is the default axis tick length here)
        # axis.ticks.length = unit(-2.75, "pt"),
        ## do not show top / right axis labels:
        # axis.text.x.top = element_blank(),  
        ## For Secondary Axis:
        #axis.text.y.right = element_blank(),
        ## As Above, Don't show axis titles:
        # axis.title.x.top = element_blank(),      
        axis.title.y.right = element_blank(),
        # Change the distance between y axis title and ticks:
        axis.title.y = element_text(margin = margin(
          t = 0, r = 20, b = 0, l = 0)),
        panel.background = element_blank())

https://i.stack.imgur.com/ocVJO.png

使用效果包更改布局顺序：R

Change Layout order using Effects Package: R

r

effects

lattice