Python 未附加到列表

Question

我有一个以前使用过的脚本，它使用关键字列表来查询包含多个列和条目的主文件。该脚本应逐行读取主文件，并在遇到关键字时将整行写入新文件。

关键字文件如下所示：

A2M,ABCC9,ACADVL,ACTC1,ACTN2,ADA2,AGL

主文件如下所示：

8:27379821,8,27379821,[A/T],NM_001979,NM_001256482,NM_001256483,NM_001256484,A2M,A2M,A2M,A2M,,Silent,Silent,Silent,Silent
GSA-rs72475893,8,27380763,[A/G],NM_001979,NM_001256482,NM_001256483,NM_001256484,AM,AM,AM,AM,EXON,Missense_R1407W,Missense_R1307W,Missense_R1257W,Missense_R1407W
8:27381207,8,27381207,[A/C],NM_001979,NM_001256482,NM_001256483,NM_001256484,ADA2,ADA2,ADA2,ADA2,,Silent,Silent,Silent,Silent 
GSA-rs117056676,6,72385948,[T/C],,,,,AADACL2-AS1,AADAC,EXON,Silent,Silent,Missense_X400Q

所需的输出将是：

8:27379821,8,27379821,[A/T],NM_001979,NM_001256482,NM_001256483,NM_001256484,A2M,A2M,A2M,A2M,,Silent,Silent,Silent,Silent
8:27381207,8,27381207,[A/C],NM_001979,NM_001256482,NM_001256483,NM_001256484,ADA2,ADA2,ADA2,ADA2,,Silent,Silent,Silent,Silent

我使用的代码如下。我遇到的问题是“匹配”列表变量似乎是空的，它没有附加任何内容。为什么会这样？它不进行任何匹配吗？还是因为它没有将它们附加到列表中？

我试过将主文件和关键字文件用作 .csv 和 .txt，但 none 有效。

感谢您的帮助！

#open the list of words to search for
list_file = open(r'file.csv','r')

search_words = []

#loop through the words in the search list
for word in list_file:

    #save each word in an array and strip whitespace
    search_words.append(word.strip())

list_file.close()

#this is where the matching lines will be stored
matches = []

#open the master file
master_file = open(r'file2.csv','r')

#loop through each line in the master file
for line in master_file:

    #split the current line into array, this allows for us to use the "in" operator to search for exact strings
    current_line = line.split()

    #loop through each search word
    for search_word in search_words:

        #check if the search word is in the current line
        if search_word in current_line:

            #if found then save the line as we found it in the file
            matches.append(line)

            #once found then stop searching the current line
            break

master_file.close()

#create the new file
new_file = open(r'file3.txt', 'w')

#loop through all of the matched lines
for line in matches:

    #write the current matched line to the new file
    new_file.write(line)

new_file.close()

Answer 1

我尝试添加两个打印语句以查看幕后发生的情况，发现您正在阅读的第一个文件没有将句子拆分成单独的单词。

search_words 是这样存储的：

search_words = ['hello this is a line']

而不是像这样

search_words = ['hello', 'this', 'is', 'a', 'line']

我修改了第10行

对此：search_words += (word.strip()).split() 而不是这个：search_words.append(word.strip())

修改后的代码如下：

#open the list of words to search for
list_file = open(r'file.csv','r')

search_words = []

#loop through the words in the search list
for word in list_file:

    #save each word in an array and strip whitespace
    search_words += (word.strip()).split()

list_file.close()

#print (search_words)    

#this is where the matching lines will be stored
matches = []

#open the master file
master_file = open(r'file2.csv','r')

#loop through each line in the master file
for line in master_file:

    #split the current line into array, this allows for us to use the "in" operator to search for exact strings
    current_line = line.split()

    #print (current_line)

    #loop through each search word
    for search_word in search_words:

        #check if the search word is in the current line
        if search_word in current_line:

            #if found then save the line as we found it in the file
            matches.append(line)

            #once found then stop searching the current line
            break

master_file.close()

#create the new file
new_file = open(r'file3.txt', 'w')

#loop through all of the matched lines
for line in matches:

    #write the current matched line to the new file
    new_file.write(line)

new_file.close()

Answer 2

一目了然有两个问题：

迭代文件会给你行，而不是在 , 字符上拆分。在使用 .strip() 并附加到您的搜索列表之前，您需要使用 .split()。我已经删除了每一行的迭代，因为您的示例输入只有一行，但是如果您希望有多行，您可以很容易地将其添加回去。

其次，.split() 将默认拆分为（一个 space），而不是 ,，因此您需要将其指定为 [= 的参数13=].

通过这些修复（并使用上下文打开文件），修复代码为：

search_words = []
with open(r'file.csv','r') as list_file:
    for word in list_file.read().split(","):  # Fix 1
        search_words.append(word.strip())

matches = []

with open(r'file2.csv','r') as master_file:
    for line in master_file:
        # Not strictly necessary, we can search in the string using in
        current_line = line.split(",")   # Fix 2

        for search_word in search_words:
            if search_word in current_line:
                matches.append(line)
                break

with open(r'file3.txt', 'w') as new_file:
    for line in matches:
        new_file.write(line)
        print(line)

结果：

8:27379821,8,27379821,[A/T],NM_001979,NM_001256482,NM_001256483,NM_001256484,A2M,A2M,A2M,A2M,,Silent,Silent,Silent,Silent
8:27381207,8,27381207,[A/C],NM_001979,NM_001256482,NM_001256483,NM_001256484,ADA2,ADA2,ADA2,ADA2,,Silent,Silent,Silent,Silent

（注意控制台输出每行之间有额外的新行）

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