空间连接后计算每个国家的空间平均值

Question

您好，我在底部使用以下代码从坐标中提取国家/地区。请参阅下面的url，其中提供了更详细的代码解释：.

我的主要 variable/value 是月平均 pdsi 值来自：https://psl.noaa.gov/data/gridded/data.pdsi.html。下图表示由下面的代码创建的可视化的一部分。阴影正方形代表 pdsi 值的空间区域，它与世界的 shapefile 重叠。

从比利时的图像中可以看出，这4个方块与比利时的陆地面积相接，同时也与其他国家相接。如果我将基准值归因于比利时，我认为这会高估平均 pdsi 值。尤其是当考虑到底部的两个方块几乎不接触比利时时，计算平均值时这些值的权重应该显着降低。因此，有没有一种方法可以合并某种加权平均值，其中一个国家/地区内每个正方形的面积都可以用作调整每个 pdsi 值的权重？此外，我希望不仅为比利时而且为所有国家/地区标准化此流程。

如有任何帮助，我们将不胜感激！

import geopandas as gpd
import numpy as np
import plotly.express as px
import requests
from pathlib import Path
from zipfile import ZipFile
import urllib
import shapely.geometry
import xarray as xr

# download NetCDF data...
# fmt: off
url = "https://psl.noaa.gov/repository/entry/get/pdsi.mon.mean.selfcalibrated.nc?entryid=synth%3Ae570c8f9-ec09-4e89-93b4-babd5651e7a9%3AL2RhaV9wZHNpL3Bkc2kubW9uLm1lYW4uc2VsZmNhbGlicmF0ZWQubmM%3D"
f = Path.cwd().joinpath(Path(urllib.parse.urlparse(url).path).name)
# fmt: on

if not f.exists():
    r = requests.get(url, stream=True, headers={"User-Agent": "XY"})
    with open(f, "wb") as fd:
        for chunk in r.iter_content(chunk_size=128):
            fd.write(chunk)
ds = xr.open_dataset(f)
pdsi = ds.to_dataframe()
pdsi = pdsi.reset_index().dropna()  # don't care about places in oceans...

# use subset for testing... last 5 times...
pdsim = pdsi.loc[pdsi["time"].isin(pdsi.groupby("time").size().index[-5:])]

# create geopandas dataframe
gdf = gpd.GeoDataFrame(
    pdsim, geometry=pdsim.loc[:, ["lon", "lat"]].apply(shapely.geometry.Point, axis=1)
)

# make sure that data supports using a buffer...
assert (
    gdf["lat"].diff().loc[lambda s: s.ne(0)].mode()
    == gdf["lon"].diff().loc[lambda s: s.ne(0)].mode()
).all()
# how big should the square buffer be around the point??
buffer = gdf["lat"].diff().loc[lambda s: s.ne(0)].mode().values[0] / 2
gdf["geometry"] = gdf["geometry"].buffer(buffer, cap_style=3)

# Import shapefile from geopandas
path_to_data = gpd.datasets.get_path("naturalearth_lowres")
world_shp = gpd.read_file(path_to_data)

# the solution... spatial join buffered polygons to countries
# comma separate associated countries
gdf = gdf.join(
    world_shp.sjoin(gdf.set_crs("EPSG:4326"))
    .groupby("index_right")["name"]
    .agg(",".join)
)
gdf["time_a"] = gdf["time"].dt.strftime("%Y-%b-%d")

# simplest way to test is visualise...
px.choropleth_mapbox(
    gdf,
    geojson=gdf.geometry,
    locations=gdf.index,
    color="pdsi",
    hover_data=["name"],
    animation_frame="time_a",
    opacity=.3
).update_layout(
    mapbox={"style": "carto-positron", "zoom": 1},
    margin={"l": 0, "r": 0, "t": 0, "b": 0},
)

Answer 1

使用 https://geopandas.org/en/stable/docs/reference/api/geopandas.GeoSeries.intersection.html 你可以获得与国家多边形相交的部分网格
利用面积，可以计算重叠的比例
由此我生成了两个可视化
1. 显示网格重叠的国家和重叠程度
2. 使用加权平均值对国家进行汇总，并计算可用于提高透明度的其他措施

我不知道以这种方式（均值或加权平均值）汇总 PDSI 在数学上/科学上是否合理。这确实演示了如何获得您的问题请求的结果。

# the solution... spatial join buffered polygons to countries
# plus work out overlap between PDSI grid and country.  Area of each grid is constant...
gdf_c = (
    world_shp.sjoin(gdf.set_crs("EPSG:4326"))
    .merge(
        gdf.loc[:, "geometry"],
        left_on="index_right",
        right_index=True,
        suffixes=("", "_pdsi"),
    )
    .assign(
        overlap=lambda d: (
            d["geometry"]
            .intersection(gpd.GeoSeries(d["geometry_pdsi"], crs="EPSG:4326"))
            .area
            / (buffer * 2) ** 2
        ).round(3)
    )
)

# comma separate associated countries and a list of overlaps
gdf_pdsi = gdf.loc[:, ["geometry", "time", "pdsi"]].join(
    gdf_c.groupby("index_right").agg({"name": ",".join, "overlap": list})
)
gdf_pdsi["time_a"] = gdf_pdsi["time"].dt.strftime("%Y-%b-%d")

# simplest way to test is visualise...
fig_buf = px.choropleth_mapbox(
    gdf_pdsi,
    geojson=gdf_pdsi.geometry,
    locations=gdf_pdsi.index,
    color="pdsi",
    hover_data=["name", "overlap"],
    animation_frame="time_a",
    opacity=0.3,
).update_layout(
    mapbox={"style": "carto-positron", "zoom": 1},
    margin={"l": 0, "r": 0, "t": 0, "b": 0},
)

fig_buf

import pandas as pd

# prepare data to plot by country
df_pdsi = (
    gdf_c.groupby(["name", "time"])
    .apply(
        lambda d: pd.Series(
            {
                "weighted_pdsi": (d["pdsi"] * d["overlap"]).sum() / d["overlap"].sum(),
                "unweighted_pdsi": d["pdsi"].mean(),
                "min_pdsi": d["pdsi"].min(),
                "max_pdsi": d["pdsi"].max(),
                "min_overlap": d["overlap"].min(),
                "max_overlap": d["overlap"].max(),
                "size_pdsi": len(d["pdsi"]),
                # "pdsi_list":[round(v,2) for v in d["pdsi"]]
            }
        )
    )
    .reset_index()
)
df_pdsi["time_a"] = df_pdsi["time"].dt.strftime("%Y-%b-%d")
fig = px.choropleth_mapbox(
    df_pdsi,
    geojson=world_shp.set_index("name").loc[:, "geometry"],
    locations="name",
    color="weighted_pdsi",
    hover_data=df_pdsi.columns,
    animation_frame="time_a",
    opacity=0.3,
).update_layout(
    mapbox={"style": "carto-positron", "zoom": 1},
    margin={"l": 0, "r": 0, "t": 0, "b": 0},
)
fig

空间连接后计算每个国家的空间平均值

Calculating spatial averages for each country after spatial join

python

spatial

geopandas

reverse-geocoding

shapely