根据两个文件中的匹配部分将数据从一个文件加载到另一个文件

Question

输入1

>Aa,Ab,Ac,ET0001
>Ba,Bb,Bc,ET0002
>Ca,Cb,Cc,ET0003

输入2

>Infor_a, aa:dfkvl, bb:csd, cc:ET0001
sldcksdlksjelkjfslkdjflskdjflskd
sldkcmowdimnwo
>Infor_b, aa:coeq, bb:ock, cc:ET0056
lskdjocisnmodk
>Infor_c, aa:vwjm, bb:cxj, cc:ET0751
spodcisdokfmnwoke
woeinmfwoeinflsdkvm
sldknmflwkenmlwk
>Infor_d, aa:wokx, bb:rkx, cc:ET0003
sodicjsodijsoi

预期输出

>Aa,Ab,Ac,ET0001
sldcksdlksjelkjfslkdjflskdjflskd
sldkcmowdimnwo
>Ba,Bb,Bc,ET0002
NaN
>Ca,Cb,Cc,ET0003
sodicjsodijsoi

代码

with open(input1, 'r') as fr1, open(input2, 'r') as fr2, open(output, 'w') as fw:

    temp = []
    while (fr2):
        line2 = fr2.readline()

        if line2.startswith('>'):
            templist  = line2.strip().split()
            for element in templist:
                if element.startswith('cc:ET'):
                    replaced_element = element.replace('cc:','')
                    temp.append(replaced_element)

        if not line2:
            break

我在模板中添加数据（从 'input2' 中的 'ET' 开始）。

我想获取“>”下与'input2'中的'ETnumber'匹配的信息。 2.If 'ETnumber' 和 'input1' 匹配，我想在 'input1'.

你对我的代码（使用 os.listdir）的下一步有什么建议吗？

Answer 1

你可以用一个字典来保存f2中的匹配项，然后一个简单的循环：

import re
with open(input1, 'r') as fr1, open(input2, 'r') as fr2, open(output, 'w') as fw:
    values = dict(re.findall('(ET\d+)\n([^>]+)', f2.read()))
    for line in f1:
        fw.write(line)
        fw.write(values.get(line.rsplit(',',1)[-1],'NaN\n'))

输出：

>Aa,Ab,Ac,ET0001
sldcksdlksjelkjfslkdjflskdjflskd
sldkcmowdimnwo
>Ba,Bb,Bc,ET0002
NaN
>Ca,Cb,Cc,ET0003
sodicjsodijsoi

注意。就像你之前的问题一样，不要做你奇怪的事情：

while (f):
    line = f.readline()
    ...
    if not line:
        break

就这样：

for line in f:
    ...

Answer 2

这不是对@mozway 提供的优秀产品的功能改进，而是采取了一种循序渐进的方法，对于新手来说可能更容易理解：

import os
from collections import defaultdict

TILDE = '~'
DIR = 'logan'
HOME = os.path.expanduser(TILDE)
NAN = 'NaN\n'
CC = 'cc:'

I_1 = dict()

with open(os.path.join(HOME, DIR, 'input1.txt')) as infile:
    for line in infile:
        t = line.strip().split(',')
        I_1[t[-1]] = t

I_2 = defaultdict(list)
k = TILDE

with open(os.path.join(HOME, DIR, 'input2.txt')) as infile:
    for line in infile:
        if line.startswith('>'):
            i = line.find(CC)
            if i >= 0:
                k = line[i+len(CC):].strip().split(',')[0]
        else:
            I_2[k].append(line)

with open(os.path.join(HOME, DIR, 'output1.txt'), 'w') as outfile:
    for k, v in I_1.items():
        print(f'{",".join(v)}', file=outfile)
        print(f'{"".join(I_2.get(k, NAN))}', file=outfile, end='')

根据两个文件中的匹配部分将数据从一个文件加载到另一个文件

Load data from one file to the other based on the matching part in two files

python

append

strip

startswith

temp