在图形执行模式下拆分 tensorflow tf.data 数据集的示例

Question

目标

我有一个 tf.data.Dataset，其中一些示例太长（0 轴的大小太大）。我想把这些过长的例子分成几个例子，每个例子都是原始例子的一部分。如果一个特定的例子不能被所需的块大小整除，我想 t运行计算余数。

例如，如果原始数据集的 numpy 视图如下所示（5 个元素）：

>>> print(list(dataset.as_numpy_iterator()))
[array([25], dtype=int32),
 array([ 6, 91], dtype=int32),
 array([15, 30, 96], dtype=int32),
 array([14, 45, 27, 72], dtype=int32),
 array([ 7, 75, 89, 47, 66], dtype=int32)]

并且所需的块大小为 2，因此我希望新数据集如下（7 个元素）：

>>> new_dataset = chunk_dataset(dataset, chunk_size=2)
>>> print(list(new_dataset.as_numpy_iterator()))
[array([25], dtype=int32),
 array([ 6, 91], dtype=int32),
 array([15, 30], dtype=int32),
 array([14, 45], dtype=int32),
 array([27, 72], dtype=int32),
 array([7, 75], dtype=int32)]
 array([89, 47], dtype=int32)]

问题

我无法编写与 tf.data.Dataset 一起工作的分块函数，其中所有操作运行都处于图形模式（与急切执行相反）。根据我尝试的确切分块功能，我运行遇到了不同的错误。

请注意，我确实知道如何在图形模式之外实现这一点，例如在 numpy 中或使用 tf eager execution。我想将其写成 tf.data.Dataset 操作，以便高效地预处理我的示例。

代码

另请参阅 this Colab notebook 以重现我的问题。

import tensorflow as tf
import numpy as np

from typing import List, Callable

"""## Code for chunking"""

def chunk_tensor_v1(input_tensor: tf.Tensor,
                    chunk_size: int) -> List[tf.Tensor]:

    tensor_chunks = []  # type: List[tf.Tensor]

    while tf.shape(input_tensor)[0] >= chunk_size:
        chunk = input_tensor[:chunk_size]
        tensor_chunks.append(chunk)
        input_tensor = input_tensor[chunk_size:]

    return tensor_chunks

def chunk_tensor_v2(input_tensor: tf.Tensor,
                    chunk_size: int) -> List[tf.Tensor]:

    frames = input_tensor.shape[0]

    if frames > chunk_size:
        remainder = frames % chunk_size
    else:
        remainder = 0

    if remainder != 0:
        input_tensor = input_tensor[:-remainder]

    num_splits = max(frames // chunk_size, 1)

    return tf.split(input_tensor, num_splits, axis=0)

def chunk_example(example: tf.Tensor,
                  chunk_size: int,
                  chunking_function: Callable) -> tf.data.Dataset:

    tensor_chunks = chunking_function(example, chunk_size=chunk_size)

    return tf.data.Dataset.from_tensor_slices(tensor_chunks)

def chunk_dataset(dataset: tf.data.Dataset, chunk_size: int, chunking_function: Callable) -> tf.data.Dataset:

    dataset = dataset.map(lambda example: chunk_example(example=example, chunk_size=chunk_size, chunking_function=chunking_function))
    dataset = dataset.interleave(lambda x: x, cycle_length=1, num_parallel_calls=tf.data.AUTOTUNE)

    return dataset

"""## Code to create a dummy dataset"""

def create_dataset_with_single_example(size: int):
  t = tf.random.uniform((size,), minval=0, maxval=100, dtype=tf.dtypes.int32)
  d = tf.data.Dataset.from_tensors(t)

  return d

def create_dataset(num_examples: int) -> tf.data.Dataset:
  examples = [create_dataset_with_single_example(n + 1) for n in range(num_examples)]

  dataset = tf.data.Dataset.from_tensor_slices(examples)
  dataset = dataset.interleave(lambda x: x, cycle_length=1, num_parallel_calls=tf.data.AUTOTUNE)

  return dataset

"""## Testing the chunking code with the dummy dataset"""

num_examples = 5

dataset = create_dataset(num_examples)

print(list(dataset.as_numpy_iterator()))

chunk_dataset(dataset, chunk_size=2, chunking_function=chunk_tensor_v1)

chunk_dataset(dataset, chunk_size=2, chunking_function=chunk_tensor_v2)

错误

使用chunk_tensor_v1导致

InaccessibleTensorError: tf.Graph captured an external symbolic tensor. The symbolic tensor <tf.Tensor 'while/strided_slice:0' shape=(None,) dtype=int32> is captured by FuncGraph(name=Dataset_map_lambda, id=140570786598224), but it is defined at FuncGraph(name=while_body_485049, id=140570787725264). A tf.Graph is not allowed to capture symoblic tensors from another graph. Use return values, explicit Python locals or TensorFlow collections to access it. Please see https://www.tensorflow.org/guide/function#all_outputs_of_a_tffunction_must_be_return_values for more information.

和chunk_tensor_v2导致

TypeError: '>' not supported between instances of 'NoneType' and 'int'

如果有人知道如何进一步简化我的问题，我很乐意编辑问题。

Answer 1

有点棘手，但绝对有可能！你可以尝试这样的事情：

核心部分代码（大概可以简化一下）:

dataset1 = dataset.filter(lambda x: tf.less_equal(tf.shape(x)[0], chunk_size))
dataset2 = dataset.filter(lambda x: tf.greater(tf.shape(x)[0], chunk_size))

def body(i, m, n):
  n = n.write(n.size(), m[i:i+chunk_size])
  return tf.add(i,chunk_size), m, n 

def split_data(data, chunk_size):
    length = tf.shape(data)[0]
    x = data[:(length // chunk_size) * chunk_size]
    ta = tf.TensorArray(dtype=tf.int32, size=0, dynamic_size=True)
    i0 = tf.constant(0)
    c = lambda i, m, n: tf.less(i, tf.shape(x)[0] - 1)
    _, _, out = tf.while_loop(c, body, loop_vars=[i0, x, ta])
    return out.stack()

dataset2 = dataset2.map(lambda x: split_data(x, chunk_size))
dataset2 = dataset2.flat_map(tf.data.Dataset.from_tensor_slices)
dataset = dataset1.concatenate(dataset2)

整个代码:

import tensorflow as tf
tf.random.set_seed(456)

def create_dataset_with_single_example(size: int):
  t = tf.random.uniform((size,), minval=0, maxval=100, dtype=tf.dtypes.int32)
  d = tf.data.Dataset.from_tensors(t)

  return d

def create_dataset(num_examples: int) -> tf.data.Dataset:
  examples = [create_dataset_with_single_example(n + 1) for n in range(num_examples)]

  dataset = tf.data.Dataset.from_tensor_slices(examples)
  dataset = dataset.interleave(lambda x: x, cycle_length=1, num_parallel_calls=tf.data.AUTOTUNE)

  return dataset

num_examples = 5
chunk_size = 2
dataset = create_dataset(num_examples)
print('Before --> \n')
for d in dataset:
  print(d)

dataset1 = dataset.filter(lambda x: tf.less_equal(tf.shape(x)[0], chunk_size))
dataset2 = dataset.filter(lambda x: tf.greater(tf.shape(x)[0], chunk_size))

def body(i, m, n):
  n = n.write(n.size(), m[i:i+chunk_size])
  return tf.add(i,chunk_size), m, n 

def split_data(data, chunk_size):
    length = tf.shape(data)[0]
    x = data[:(length // chunk_size) * chunk_size]
    ta = tf.TensorArray(dtype=tf.int32, size=0, dynamic_size=True)
    i0 = tf.constant(0)
    c = lambda i, m, n: tf.less(i, tf.shape(x)[0] - 1)
    _, _, out = tf.while_loop(c, body, loop_vars=[i0, x, ta])
    return out.stack()

dataset2 = dataset2.map(lambda x: split_data(x, chunk_size))
dataset2 = dataset2.flat_map(tf.data.Dataset.from_tensor_slices)
dataset = dataset1.concatenate(dataset2)

print('\nAfter --> \n')
for d in dataset:
  print(d)

Before --> 

tf.Tensor([44], shape=(1,), dtype=int32)
tf.Tensor([23 10], shape=(2,), dtype=int32)
tf.Tensor([41 86  2], shape=(3,), dtype=int32)
tf.Tensor([54 78 20 93], shape=(4,), dtype=int32)
tf.Tensor([51 87 96 84 31], shape=(5,), dtype=int32)

After --> 

tf.Tensor([44], shape=(1,), dtype=int32)
tf.Tensor([23 10], shape=(2,), dtype=int32)
tf.Tensor([41 86], shape=(2,), dtype=int32)
tf.Tensor([54 78], shape=(2,), dtype=int32)
tf.Tensor([20 93], shape=(2,), dtype=int32)
tf.Tensor([51 87], shape=(2,), dtype=int32)
tf.Tensor([96 84], shape=(2,), dtype=int32)

chunk_size = 3:

Before --> 

tf.Tensor([44], shape=(1,), dtype=int32)
tf.Tensor([23 10], shape=(2,), dtype=int32)
tf.Tensor([41 86  2], shape=(3,), dtype=int32)
tf.Tensor([54 78 20 93], shape=(4,), dtype=int32)
tf.Tensor([51 87 96 84 31], shape=(5,), dtype=int32)

After --> 

tf.Tensor([44], shape=(1,), dtype=int32)
tf.Tensor([23 10], shape=(2,), dtype=int32)
tf.Tensor([41 86  2], shape=(3,), dtype=int32)
tf.Tensor([54 78 20], shape=(3,), dtype=int32)
tf.Tensor([51 87 96], shape=(3,), dtype=int32)

chunk_size = 4:

Before --> 

tf.Tensor([44], shape=(1,), dtype=int32)
tf.Tensor([23 10], shape=(2,), dtype=int32)
tf.Tensor([41 86  2], shape=(3,), dtype=int32)
tf.Tensor([54 78 20 93], shape=(4,), dtype=int32)
tf.Tensor([51 87 96 84 31], shape=(5,), dtype=int32)

After --> 

tf.Tensor([44], shape=(1,), dtype=int32)
tf.Tensor([23 10], shape=(2,), dtype=int32)
tf.Tensor([41 86  2], shape=(3,), dtype=int32)
tf.Tensor([54 78 20 93], shape=(4,), dtype=int32)
tf.Tensor([51 87 96 84], shape=(4,), dtype=int32)

在图形执行模式下拆分 tensorflow tf.data 数据集的示例

Split examples of a tensorflow tf.data dataset in graph execution mode

python

tensorflow

tensorflow2.0

tensorflow-datasets