在 dataproc 上使用 PEX 环境打包 PySpark

Question

我正在尝试使用 PEX 将 pyspark 作业打包为 google 云数据处理器上的运行，但出现 Permission Denied 错误。

我已将我的第三方和本地依赖项打包到 env.pex 中，并将使用这些依赖项的入口点打包到 main.py 中。然后我 gsutil cp 这两个文件到 gs://<PATH> 和运行下面的脚本。

from google.cloud import dataproc_v1 as dataproc
from google.cloud import storage

def submit_job(project_id: str, region: str, cluster_name: str):
    job_client = dataproc.JobControllerClient(
        client_options={"api_endpoint": f"{region}-dataproc.googleapis.com:443"}
    )
    operation = job_client.submit_job_as_operation(
        request={
            "project_id": project_id,
            "region": region,
            "job": {
                "placement": {"cluster_name": cluster_name},
                "pyspark_job": {
                    "main_python_file_uri": "gs://<PATH>/main.py",
                    "file_uris": ["gs://<PATH>/env.pex"],
                    "properties": {
                        "spark.pyspark.python": "./env.pex",
                        "spark.executorEnv.PEX_ROOT": "./.pex",
                    },
                },
            },
        }
    )

我得到的错误是

Exception in thread "main" java.io.IOException: Cannot run program "./env.pex": error=13, Permission denied
    at java.lang.ProcessBuilder.start(ProcessBuilder.java:1048)
    at org.apache.spark.deploy.PythonRunner$.main(PythonRunner.scala:97)
    at org.apache.spark.deploy.PythonRunner.main(PythonRunner.scala)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:498)
    at org.apache.spark.deploy.JavaMainApplication.start(SparkApplication.scala:52)
    at org.apache.spark.deploy.SparkSubmit.org$apache$spark$deploy$SparkSubmit$$runMain(SparkSubmit.scala:951)
    at org.apache.spark.deploy.SparkSubmit.doRunMain(SparkSubmit.scala:180)
    at org.apache.spark.deploy.SparkSubmit.submit(SparkSubmit.scala:203)
    at org.apache.spark.deploy.SparkSubmit.doSubmit(SparkSubmit.scala:90)
    at org.apache.spark.deploy.SparkSubmit$$anon.doSubmit(SparkSubmit.scala:1039)
    at org.apache.spark.deploy.SparkSubmit$.main(SparkSubmit.scala:1048)
    at org.apache.spark.deploy.SparkSubmit.main(SparkSubmit.scala)
Caused by: java.io.IOException: error=13, Permission denied
    at java.lang.UNIXProcess.forkAndExec(Native Method)
    at java.lang.UNIXProcess.<init>(UNIXProcess.java:247)
    at java.lang.ProcessImpl.start(ProcessImpl.java:134)
    at java.lang.ProcessBuilder.start(ProcessBuilder.java:1029)
    ... 14 more

我应该期望像这样打包我的环境才能工作吗？我没有看到一种方法来更改 pyspark 作业配置中作为 file_uris 包含的文件的权限，并且我没有在 google 云上看到任何关于使用 PEX 打包的文档，但是 PySpark official docs include this guide.

感谢任何帮助 - 谢谢！

Answer 1

您始终可以使用兼容的解释器运行 PEX 文件。因此，您可以尝试 python env.pex，而不是指定 ./env.pex 的程序。这不需要 env.pex 可执行。

Answer 2

最后我无法直接运行 pex，但目前确实有一个解决方法，这是 pants slack community 中的用户建议的（谢谢！）。 ..

解决方法是在集群初始化脚本中将 pex 解压为 venv。

初始化脚本gsutil复制到gs://<PATH TO INIT SCRIPT>:

#!/bin/bash

set -exo pipefail

readonly PEX_ENV_FILE_URI=$(/usr/share/google/get_metadata_value attributes/PEX_ENV_FILE_URI || true)
readonly PEX_FILES_DIR="/pexfiles"
readonly PEX_ENV_DIR="/pexenvs"

function err() {
    echo "[$(date +'%Y-%m-%dT%H:%M:%S%z')]: $*" >&2
    exit 1
}

function install_pex_into_venv() {
    local -r pex_name=${PEX_ENV_FILE_URI##*/}
    local -r pex_file="${PEX_FILES_DIR}/${pex_name}"
    local -r pex_venv="${PEX_ENV_DIR}/${pex_name}"

    echo "Installing pex from ${pex_file} into venv ${pex_venv}..."
    gsutil cp "${PEX_ENV_FILE_URI}" "${pex_file}"
    PEX_TOOLS=1 python "${pex_file}" venv --compile "${pex_venv}"
}

function main() {
    if [[ -z "${PEX_ENV_FILE_URI}" ]]; then
        err "ERROR: Must specify PEX_ENV_FILE_URI metadata key"
    fi

    install_pex_into_venv
}

main

启动集群和运行初始化脚本以将 pex 解压到集群上的 venv 中：

from google.cloud import dataproc_v1 as dataproc

def start_cluster(project_id: str, region: str, cluster_name: str):
    cluster_client = dataproc.ClusterControllerClient(...)
    operation = cluster_client.create_cluster(
        request={
            "project_id": project_id,
            "region": region,
            "cluster": {
                "project_id": project_id,
                "cluster_name": cluster_name,
                "config": {
                    "master_config": <CONFIG>,
                    "worker_config": <CONFIG>,
                    "initialization_actions": [
                        {
                            "executable_file": "gs://<PATH TO INIT SCRIPT>",
                        },
                    ],
                    "gce_cluster_config": {
                        "metadata": {"PEX_ENV_FILE_URI": "gs://<PATH>/env.pex"},
                    },
                },
            },
        }
    )

启动作业并将解压的 pex venv 用于运行 pyspark 作业：

def submit_job(project_id: str, region: str, cluster_name: str):
    job_client = dataproc.ClusterControllerClient(...)
    operation = job_client.submit_job_as_operation(
        request={
            "project_id": project_id,
            "region": region,
            "job": {
                "placement": {"cluster_name": cluster_name},
                "pyspark_job": {
                    "main_python_file_uri": "gs://<PATH>/main.py",
                    "properties": {
                        "spark.pyspark.python": "/pexenvs/env.pex/bin/python",
                    },
                },
            },
        }
    )

在 dataproc 上使用 PEX 环境打包 PySpark

Packaging PySpark with PEX environment on dataproc

google-cloud-platform

pyspark

google-cloud-dataproc

dataproc

python-pex