在 M1 mac 上安装 R 包 "nloptr" 时出现问题

Question

我正在尝试在 R 和 RStudio 中安装“lme4”库，它在我使用 M1 Mac 之前可以正常工作，但现在无法安装。有问题的依赖是：“nloptr”。这是我当前的错误：

clang++ -arch arm64 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o nloptr.so init_nloptr.o nloptr.o test-C-API.o test-runner.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/R/arm64/gfortran/lib/gcc/aarch64-apple-darwin20.2.0/11.0.0 -L/opt/R/arm64/gfortran/lib -lgfortran -lemutls_w -lm -Lnlopt/lib -lnlopt -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
ld: warning: directory not found for option '-Lnlopt/lib'
ld: library not found for -lnlopt
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make: *** [nloptr.so] Error 1
ERROR: compilation failed for package ‘nloptr’
* removing ‘/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/nloptr’
Warning in install.packages :
  installation of package ‘nloptr’ had non-zero exit status

The downloaded source packages are in
    ‘/private/var/folders/ht/y6qd6yfn67x086jtwxvh42tw0000gn/T/RtmpULtpZq/downloaded_packages’ ```

我在蒙特雷 (12.1) 的 M1 Mac 上。我已经安装了 R 的 arm64 版本。这是我当前的版本 R 4.1.2:

> version
               _                           
platform       aarch64-apple-darwin20      
arch           aarch64                     
os             darwin20                    
system         aarch64, darwin20           
status                                     
major          4                           
minor          1.2                         
year           2021                        
month          11                          
day            01                          
svn rev        81115                       
language       R                           
version.string R version 4.1.2 (2021-11-01)
nickname       Bird Hippie

我已经在终端中尝试了以下操作：brew install nlopt 和 brew install gcc。

在此之前，我也报错如下： ld: warning: directory not found for option '-L/opt/R/arm64/gfortran/lib/gcc/aarch64-apple-darwin20.2.0/11.0.0' 为了解决这个问题，基于谷歌搜索，我这样做了 export PATH=$PATH:/opt/R/arm64/gfortran/bin 还有这个 ln -sfn `xcrun --show-sdk-path` /opt/R/arm64/gfortran/SDK

Answer 1

在我的机器上（M1 Mac 运行 Big Sur），我刚刚尝试 install.packages("nloptr") 没有先做 brew install nlopt.

我收到关于 -Lnlopt/lib 的相同警告：

ld: warning: directory not found for option '-Lnlopt/lib'
ld: library not found for -lnlopt
clang-13: error: linker command failed with exit code 1 (use -v to see invocation)
make: *** [nloptr.so] Error 1
ERROR: compilation failed for package ‘nloptr’

但在警告之前我看到：

checking if pkg-config knows NLopt... no
using NLopt via local cmake build on arm64

------------------ CMAKE NOT FOUND --------------------

CMake was not found on the PATH. Please install CMake:

 - yum install cmake          (Fedora/CentOS; inside a terminal)
 - apt install cmake          (Debian/Ubuntu; inside a terminal).
 - pacman -S cmake            (Arch Linux; inside a terminal).
 - brew install cmake         (MacOS; inside a terminal with Homebrew)
 - port install cmake         (MacOS; inside a terminal with MacPorts)

Alternatively install CMake from: <https://cmake.org/>

-------------------------------------------------------

install.packages("nloptr") 在我使用 brew install cmake.

安装 CMake 后成功

关于 gfortran 的最初问题，我可能建议您尝试我的说明。 R 建议安装 gfortran 的特定版本并配置编译器以通过 ~/.R/Makevars 找到该安装。你真的不需要弄乱你的 PATH...

在 M1 mac 上安装 R 包 "nloptr" 时出现问题

Problems installing R package "nloptr" on M1 mac

r

lme4