用户使用 scikit-learn 定义的 SVM 内核

Question

我在scikit-learn中自己定义内核时遇到了问题。我自己定义了高斯核并且能够拟合 SVM 但没有用它来进行预测。

更准确地说，我有以下代码

from sklearn.datasets import load_digits
from sklearn.svm import SVC
from sklearn.utils import shuffle
import scipy.sparse as sparse
import numpy as np


digits = load_digits(2)
X, y = shuffle(digits.data, digits.target)

gamma = 1.0


X_train, X_test = X[:100, :], X[100:, :]
y_train, y_test = y[:100], y[100:]

m1 = SVC(kernel='rbf',gamma=1)
m1.fit(X_train, y_train)
m1.predict(X_test)

def my_kernel(x,y):
    d = x - y
    c = np.dot(d,d.T)
    return np.exp(-gamma*c)

m2 = SVC(kernel=my_kernel)
m2.fit(X_train, y_train)
m2.predict(X_test)

m1 和 m2 应该是一样的，但是 m2.predict(X_test) return 错误：

operands could not be broadcast together with shapes (260,64) (100,64)

没看懂问题

此外，如果 x 是一个数据点，m1.predict(x) 给出 +1/-1 结果，如预期的那样，但 m2.predict(x) 给出 +1/-1 的数组-1... 不知道为什么。

Answer 1

错误在 x - y 行。你不能像那样减去两者，因为两者的第一个维度可能不相等。以下是 rbf 内核在 scikit-learn 中的实现方式，摘自 here（仅保留要点）：

def row_norms(X, squared=False):

    if issparse(X):
        norms = csr_row_norms(X)
    else:
        norms = np.einsum('ij,ij->i', X, X)

    if not squared:
        np.sqrt(norms, norms)
    return norms

def euclidean_distances(X, Y=None, Y_norm_squared=None, squared=False):
   """
    Considering the rows of X (and Y=X) as vectors, compute the
    distance matrix between each pair of vectors.

    [...]


    Returns
    -------
    distances : {array, sparse matrix}, shape (n_samples_1, n_samples_2)
   """
    X, Y = check_pairwise_arrays(X, Y)

    if Y_norm_squared is not None:
        YY = check_array(Y_norm_squared)
        if YY.shape != (1, Y.shape[0]):
            raise ValueError(
                "Incompatible dimensions for Y and Y_norm_squared")
    else:
        YY = row_norms(Y, squared=True)[np.newaxis, :]

    if X is Y:  # shortcut in the common case euclidean_distances(X, X)
        XX = YY.T
    else:
        XX = row_norms(X, squared=True)[:, np.newaxis]

    distances = safe_sparse_dot(X, Y.T, dense_output=True)
    distances *= -2
    distances += XX
    distances += YY
    np.maximum(distances, 0, out=distances)

    if X is Y:
        # Ensure that distances between vectors and themselves are set to 0.0.
        # This may not be the case due to floating point rounding errors.
        distances.flat[::distances.shape[0] + 1] = 0.0

    return distances if squared else np.sqrt(distances, out=distances)

def rbf_kernel(X, Y=None, gamma=None):

    X, Y = check_pairwise_arrays(X, Y)
    if gamma is None:
        gamma = 1.0 / X.shape[1]

    K = euclidean_distances(X, Y, squared=True)
    K *= -gamma
    np.exp(K, K)    # exponentiate K in-place
    return K

您可能想更深入地研究代码，但请查看 euclidean_distances 函数的注释。您要实现的目标的天真实现是这样的：

def my_kernel(x,y):
    d = np.zeros((x.shape[0], y.shape[0]))
    for i, row_x in enumerate(x):
        for j, row_y in enumerate(y):
            d[i, j] = np.exp(-gamma * np.linalg.norm(row_x - row_y))

    return d

用户使用 scikit-learn 定义的 SVM 内核

User defined SVM kernel with scikit-learn

python-2.7

machine-learning

scikit-learn

svm

libsvm