如何在 forloop 中的列表中的矩阵的特定行上设置变量限制

Question

我有一个矩阵列表，我用它迭代矩阵乘以一个初始数字向量。我有一个 forloop 来完成此操作，并且能够以示例固定费率 (7,000) 设置上限，但想用一个可变上限替换它，该上限由预先指定的数字向量顺序定义。请参阅下面的示例代码，了解我现有的有效代码。总之，我想用列表中包含的 50 年（50 个矩阵）的 10,000 次迭代的数字向量替换以下代码行中的 7,000 限制

allYearslist[[t]][4,i2[j]] <- ifelse (allYearslist[[t]][4,i2[j]] > 7000, 7000, allYearslist[[t]][4 ,i2[j]]) # 将密度依赖添加到第 n 行

# loading packages
library(plyr)
library(popbio)
library(ggplot2)
library(tidyr)
library(dplyr)
library(reshape2)
library(simpleboot)
library(boot)
library(reshape)
library(vctrs)

# setting seed for replication purposes and creating function to project. replicating with bootstrap
set.seed(123)

# currently with 10,000 replications 
# vector of egg survival morts
egg.to.fry.s <- vec_rep(c(seq(from = 0.50, to = 0.99,by=0.01)),10000)

# vector of fry survival morts
fry.to.one.s <- vec_rep(c(seq(from = 0.40, to = 0.89,by=0.01)),10000)

# one.to.two rates
one.to.two.s <- rbeta(500000,10,2)


  A <- lapply(1:500000, function(x)  # construct list of matrices
    matrix(c(0, 0, 10, 10,
             0, 0, 0, 0,
             0, 0, 0, 0,
             0, 0, 0, 0), nrow = 4,ncol=4, byrow = TRUE, ))
  
  Anew <- A
  
  for(t in 1:length(Anew)) {
    Anew[[t]][2,1] <- egg.to.fry.s[t]
    Anew[[t]][3,2] <- fry.to.one.s[t]
    Anew[[t]][4,3] <- one.to.two.s[t]
  }
  
  AnewSplit <- split(Anew, rep(1:10000, each = 50)) # split list into lists to represent each sim
  
  n <- c(500,100,200,3000)  # initial vector of abundances
   
  nYears = 50  # define the number of years to project over
  
  allYears <- matrix(0,nrow=4,ncol=nYears+1)  # build a storage array for all abundances
  
  allYears[,1] <- n  # set the year 0 abundance 
  
  allYearsarray<-replicate(10000,allYears)
  allYearslist <- alply(allYearsarray,3)
  

  i1 <- length(allYearslist)   # list items to loop over
  i2 <- 2:ncol(allYearslist[[1]])    # number of columns in list to loop over

  # matrix multiply each list of 50 sequentially in AnewSplit by each list in allYearslist and each column - 1
  
  for(t in 1:i1) {
    for(j in seq_along(i2)){
    allYearslist[[t]][,i2[j]] <-  AnewSplit[[t]][[j]]%*% allYearslist[[t]][,i2[j]-1]
    allYearslist[[t]][4,i2[j]] <- ifelse (allYearslist[[t]][4,i2[j]] > 7000, 7000, allYearslist[[t]][4,i2[j]])  # to add density dependence to nth row
    }
  }

Answer 1

我相信我已经回答了我自己的问题，如果有人想验证的话。我相信它会在下一组矩阵乘法开始之前限制索引行...

  # variable density dependence
  dd <- seq(from=4000, to =4049, by = 1)

  # matrix multiply each list of 50 sequentially in AnewSplit by each list in allYearslist and each column - 1
  
  for(t in 1:i1) {
    for(j in seq_along(i2)){
    allYearslist[[t]][,i2[j]] <-  AnewSplit[[t]][[j]]%*% allYearslist[[t]][,i2[j]-1]
    allYearslist[[t]][4,i2[j]] <- ifelse(allYearslist[[t]][4,i2[j]] > dd[j], dd[j], allYearslist[[t]][4,i2[j]]) # to add variable density dependence to nth row
    
    }
  }

如何在 forloop 中的列表中的矩阵的特定行上设置变量限制

How to set a variable limit on a specific row of a matrix within a list within a forloop

r

for-loop

limit

matrix-multiplication

projection