Java 复杂/大型 Stax XML

Question

我有一个 4.2 GB 的 XML 文件！显然解析整个 DOM 是不切实际的。我一直在研究 SAX 和 STAX 来完成解析这个巨大的 XML 文件。然而，我见过的所有例子都很简单。我正在处理的 XML 文件已嵌套在嵌套上。有些区域超过 10 个级别。

我找到了这个教程，但不确定它是否是一个可行的解决方案。

http://www.javacodegeeks.com/2013/05/parsing-xml-using-dom-sax-and-stax-parser-in-java.html（使用 STAX 的底部示例）

我不太确定如何处理嵌套对象。

我创建了 Java 个对象来模仿 XML 的结构。这里有一些，太多了无法展示。

Record.java

public class Record implements Serializable {

    String uid;
    StaticData staticData;
    DynamicData dynamicData;
}

Summary.java

public class Summary {

    EWUID ewuid;
    PubInfo pubInfo;
    Titles titles;
    Names names;
    DocTypes docTypes;
    Publishers publishers;
}

EWUID.java

public class EWUID {

    String collId;
    String edition;
}

PubInfo.java

public class PubInfo {

    String coverDate;
    String hasAbstract;
    String issue;
    String pubMonth;
    String pubType;
    String pubYear;
    String sortDate;
    String volume;
}

这是我到目前为止想出的代码。

public class TRWOSParser {

    XMLEventReader eventReader;
    XMLInputFactory inputFactory;
    InputStream inputStream;

    public TRWOSParser(String file) throws FileNotFoundException, XMLStreamException {
        inputFactory = XMLInputFactory.newInstance();
        inputStream = new FileInputStream(file);
        eventReader = inputFactory.createXMLEventReader(inputStream);
    }

    public void parse() throws XMLStreamException{

        while (eventReader.hasNext()) {
            XMLEvent event = eventReader.nextEvent();

            if (event.isStartElement()) {
                StartElement startElement = event.asStartElement();
                if (startElement.getName().getLocalPart().equals("record")) {
                    Record record = new Record();
                    Iterator<Attribute> attributes = startElement.getAttributes();
                    while (attributes.hasNext()) {
                        Attribute attribute = attributes.next();
                        if (attribute.getName().toString().equals("UID")) {
                            System.out.println("UID: " + attribute.getValue());
                        }
                    }
                }
            }
        }
    }
}

更新：

XML 中的数据已获得许可，因此我无法显示完整文件。这是一个非常非常小的片段，我在其中打乱了数据。

<?xml version="1.0" encoding="UTF-8"?>
<records>
    <REC>
        <UID>WOS:000310438600004</UID>
        <static_data>
            <summary>
                <EWUID>
                    <WUID coll_id="WOS" />
                    <edition value="WOS.SCI" />
                </EWUID>
                <pub_info coverdate="NOV 2012" has_abstract="N" issue="5" pubmonth="NOV" pubtype="Journal" pubyear="2012" sortdate="2012-11-01" vol="188">
                    <page begin="1662" end="1663" page_count="2">1662-1663</page>
                </pub_info>
                <titles count="6">
                    <title type="source">JOURNAL OF UROLOGY</title>
                    <title type="source_abbrev">J UROLOGY</title>
                    <title type="abbrev_iso">J. Urol.</title>
                    <title type="abbrev_11">J UROL</title>
                    <title type="abbrev_29">J UROL</title>
                    <title type="item">Something something</title>
                </titles>
                <names count="1">
                    <name addr_no="1 2 3" reprint="Y" role="author" seq_no="1">
                        <display_name>John Doe</display_name>
                        <full_name>John Doe</full_name>
                        <wos_standard>Doe, John</wos_standard>
                        <first_name>John</first_name>
                        <last_name>Doe</last_name>
                    </name>
                </names>
                <doctypes count="1">
                    <doctype>Editorial Material</doctype>
                </doctypes>
                <publishers>
                    <publisher>
                        <address_spec addr_no="1">
                            <full_address>360 PARK AVE SOUTH, NEW YORK, NY 10010-1710 USA</full_address>
                            <city>NEW YORK</city>
                        </address_spec>
                        <names count="1">
                            <name addr_no="1" role="publisher" seq_no="1">
                                <display_name>ELSEVIER SCIENCE INC</display_name>
                                <full_name>ELSEVIER SCIENCE INC</full_name>
                            </name>
                        </names>
                    </publisher>
                </publishers>
            </summary>
        </static_data>
    </REC>
</records>

Answer 1

我做了两个假设 1) 存在早期的重复，以及 2) 您可以对部分文档做一些有意义的事情。

假设您可以移动某个级别的嵌套，然后多次处理文档，每次 "handle" 文档时删除工作级别的节点。这意味着在任何给定时间只有一个工作子树将在内存中。

这是一个有效的代码片段：

package bigparse;

import static javax.xml.stream.XMLStreamConstants.CHARACTERS;
import static javax.xml.stream.XMLStreamConstants.END_DOCUMENT;
import static javax.xml.stream.XMLStreamConstants.END_ELEMENT;
import static javax.xml.stream.XMLStreamConstants.START_DOCUMENT;
import static javax.xml.stream.XMLStreamConstants.START_ELEMENT;

import java.io.FileNotFoundException;
import java.io.FileReader;
import java.io.StringWriter;
import javax.xml.parsers.DocumentBuilder;
import javax.xml.parsers.DocumentBuilderFactory;
import javax.xml.parsers.ParserConfigurationException;
import javax.xml.stream.XMLInputFactory;
import javax.xml.stream.XMLStreamException;
import javax.xml.stream.XMLStreamReader;
import javax.xml.transform.OutputKeys;
import javax.xml.transform.Transformer;
import javax.xml.transform.TransformerFactory;
import javax.xml.transform.dom.DOMSource;
import javax.xml.transform.stream.StreamResult;
import org.w3c.dom.Document;
import org.w3c.dom.Element;

public class BigParse {

    public static void main(String... args) {

        XMLInputFactory factory = XMLInputFactory.newInstance();
        DocumentBuilderFactory documentBuilderFactory = DocumentBuilderFactory.newInstance();

        try {

            XMLStreamReader streamReader = factory.createXMLStreamReader(new FileReader("src/main/resources/test.xml"));
            DocumentBuilder documentBuilder = documentBuilderFactory.newDocumentBuilder();

            Document document = documentBuilder.newDocument();
            Element rootElement = null;
            Element currentElement = null;

            int branchLevel = 0;
            int maxBranchLevel = 1;

            while (streamReader.hasNext()) {
                int event = streamReader.next();
                switch (event) {
                case START_DOCUMENT:
                    continue;
                case START_ELEMENT:

                    if (branchLevel < maxBranchLevel) {
                        Element workingElement = readElementOnly(streamReader, document);

                        if (rootElement == null) {
                            document.appendChild(workingElement);
                            rootElement = document.getDocumentElement();
                            currentElement = rootElement;
                        } else {
                            currentElement.appendChild(workingElement);
                            currentElement = workingElement;
                        }

                        branchLevel++;
                    } else {

                        workingLoop(streamReader, document, currentElement);

                    }

                    continue;
                case CHARACTERS:
                    currentElement.setTextContent(streamReader.getText());
                    continue;

                case END_ELEMENT:
                    if (currentElement != rootElement) {
                        currentElement = (Element) currentElement.getParentNode();
                        branchLevel--;
                    }

                    continue;

                case END_DOCUMENT:
                    break;
                }

            }

        } catch (ParserConfigurationException
                | FileNotFoundException
                | XMLStreamException e) {
            throw new RuntimeException(e);
        }

    }

    private static Element readElementOnly(XMLStreamReader streamReader, Document document) {

        Element workingElement = document.createElement(streamReader.getLocalName());

        for (int attributeIndex = 0; attributeIndex < streamReader.getAttributeCount(); attributeIndex++) {
            workingElement.setAttribute(
                    streamReader.getAttributeLocalName(attributeIndex),
                    streamReader.getAttributeValue(attributeIndex));

        }
        return workingElement;
    }

    private static void workingLoop(final XMLStreamReader streamReader, final Document document, final Element fragmentRoot)
            throws XMLStreamException {

        Element startElement = readElementOnly(streamReader, document);
        fragmentRoot.appendChild(startElement);

        Element currentElement = startElement;

        while (streamReader.hasNext()) {
            int event = streamReader.next();
            switch (event) {
            case START_DOCUMENT:
                continue;
            case START_ELEMENT:

                Element workingElement = readElementOnly(streamReader, document);
                currentElement.appendChild(workingElement);
                currentElement = workingElement;

                continue;
            case CHARACTERS:
                currentElement.setTextContent(streamReader.getText());
                continue;

            case END_ELEMENT:
                if (currentElement != startElement) {
                    currentElement = (Element) currentElement.getParentNode();
                    continue;

                } else {

                    handleDocument(document, startElement);

                    fragmentRoot.removeChild(startElement);
                    startElement = null;
                    return;
                }

            }

        }

    }

    // THIS FUNCTION DOES SOMETHING MEANINFUL
    private static void handleDocument(Document document, Element startElement) {

        System.out.println(stringify(document));
    }

    private static String stringify(Document document) {

        try {
            Transformer transformer = TransformerFactory.newInstance().newTransformer();
            transformer.setOutputProperty(OutputKeys.INDENT, "yes");

            StreamResult result = new StreamResult(new StringWriter());
            DOMSource source = new DOMSource(document);

            transformer.transform(source, result);

            String xmlString = result.getWriter().toString();
            return xmlString;

        } catch (Exception e) {
            throw new RuntimeException(e);
        }
    }

}

编辑：我犯了一个非常愚蠢的错误。现在修好了。它有效但不完美 -- 应该足以引导您朝着有用的方向前进。

Answer 2

与 lscoughlin 的答案类似的解决方案是使用 DOM4J，它具有处理这种情况的机制：http://dom4j.sourceforge.net/

在我看来，它更直接也更容易理解。不过，它可能不支持命名空间。

Answer 3

考虑使用以下形式的 XSLT 3.0 流转换：

<xsl:template name="main">
  <xsl:stream href="bigInput.xml">
    <xsl:for-each select="copy-of(/records/REC)">
      <!-- process one record -->
    </xsl:for-each>
  </xsl:stream>
</xsl:template>

您可以使用 Saxon-EE 9.6 进行处理。

"process one record" 逻辑可以使用 Saxon SQL 扩展，或者它可以调用扩展函数：上下文节点将是一个 REC 元素及其包含的树，在子树中完全可导航，但无法导航到当前正在处理的 REC 元素之外。

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